Gene detail information of Glyur003286s00036157 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60370.1 | 3.00E-81 | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
| NR | NP_001236089.1 | 6.67E-145 | uncharacterized protein LOC100305486 [Glycine max] |
| COG | YP_007130075.1 | 1.00E-19 | Peptidylprolyl isomerase [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q0WRJ7|FK202_ARATH | 3.00E-105 | Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic (Precursor) |
| trEMBL | tr|I1JMS9|I1JMS9_SOYBN | 5.00E-146 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03286 | 6609 | 12089 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003286s00036157.1 | PF00254.23 | FKBP_C | 158 | 225 | 9.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.456 |
| SRR1783600 | control | 3.370 |
| SRR1783602 | moderate drought stress | 4.283 |
| SRR1811619 | moderate drought stress | 4.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.164 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.963 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.574 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.803 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.380 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.781 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.477 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.967 |
| SRR2868004 | Drought Stress (root) | 3.501 |
| SRR2967015 | Control (root) | 3.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.414 |
| SRR9715740 | Leaf | 28.364 |
| SRR9715741 | Leaf | 13.297 |
| SRR9715739 | Root | 1.511 |
| SRR9715742 | Root | 1.309 |
| SRR9715743 | Root | 1.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.851 |
| SRR8749028 | MeJA induced 9h | 6.329 |
| SRR8749029 | MeJA induced 9h | 6.218 |
| SRR8749030 | Uninduced | 7.159 |
| SRR8749031 | Uninduced | 1.899 |
| SRR8749032 | Uninduced | 5.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.814 |
| SRR8400027 | Control - Root | 5.164 |