Gene detail

Gene detail information of Glyur003277s00039417

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08310.1	9.00E-73
NR	XP_003601051.1	0	hypothetical protein MTR_3g072480 [Medicago truncatula]
trEMBL	tr\|G7J309\|G7J309_MEDTR	0	Histone chaperone domain CHZ protein {ECO:0000313\|EMBL:AES71302.1}

Sequence

Transcript Sequence

>Glyur003277s00039417.1
GTCGTATAGTATATGTATCCTCACAAACCACACCGCACGGGTAATTCAAATTGAGTGTGTAAATTGATTCTAGACTTCTTAAGTGCAGTGCAGATCCAAAATTGTACCGTCACCGTGCCCTAATTTATTATACTTAGCAAAAGCAAAATCATAAAATTGCAAGTTGCGAGTTGCAGCAACAGAGACAACAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGCAGAAGATAGCGAGACGAAGAAGAAGGACGACGATATCGACGTCGAGTCGCAGATTCGAACTGCTATGCGCTCTCGCGTCCCTCACTTCAAGGAACAAGCCGATTCTTTAACATTCGAAGGTGTCCGTAGATTACTCGAGAAAGACTTGGGATTCGAGGAGTATGCTTTGGATGCGCATAAGAGATTCATCAAGCAGTGCTTGGAAAAGTGTTTAGCAGAGGTTGGTGATGATGATGATGCCCCAAAGATATCAGGGGAGGCAGGGGAAAATGGTGCAAGTACACAAGAGACAGAAGATACAAAAGAAGAATGTCGATCAAAGGATGTAAAGGATCTTTGCCCTGAAGATGAGGAGAAAATGGAAGACTCTCCAGTGTTGGGTCTGCTTAAAGAACAAAAAGGTGTTAAACTTGGAACCAAGGAAGCAGAAGGCAATGGAAGAAAAATAGTTCCAAGTGAGGCCCTAATTAAGAAAGCTGTTAGAAAAAGATCTTCATATATCAAGGCCAATGCAGAGAAAGTCACTATGGCTGGTCTTCGCCGACTATTGGAGGAAGATCTTAAACTTGATAAATTTAGTCTTGATCCCTATAAGAAGTTTATAAGTCAACAGCTTGATGAGGTATTAGCGTCTTCTGAAGTTCTGGAACCTGCAAACAATGCCAAGAAAATTGTTAAGAAGAAACCTGATACCAAAGTAACTAAAAAGGTCAGCAGTNAAGAGAAATCTGATGCTTCAGATAAGGTGAGTGACGAGGAAGAGGATCAGGAAGATGAAGTCAGACCTAGAAAAAATGGTGTTCCAAAAGGCAAGATGCAGGCTTCTGTTGGACTCAAAAAGCGTAAAGGAGAGGAGACCAATCTACTTAGCAAGAAAAAGGTCAAGCCTGCTAAAGCTGCCTCAGAAGACAATAGTGATGCAGAAGATAATGGAAACAACTCTGAAGATGATCAGTCCCATTCATCACAGGAGAAACCTNTCCAGAAGAAACAAGTTTCAACTCCTGTGTATGGTAAANGTGTGGAACACTTGAAATCTGTTATTAAAGCATGTGGAATGAGTGTTCCTCCCTCTATTTATAAAAAAGTCAAGCAGGTGCCTGAAAACAAACGGGAAGGACAACTAATTAATGAGTTGGAGGAAATACTATCTAGAGAAGGATTGTCTTCGAATCCATCTGAAAAGGAAATCAAGCAAGTGAGAAGGAAGAAGGCGAGAGCCAAGGAACTTGAGGGTATTGATATGAGTAATATTGTGTCAAGTACACGCAGAAGGTCAACAACTAGTTTTGCACCTCTTCCACCACCAAAGCCCAAGATTCCAGTTAAAAGTAGTGGCAATGATACCCAAGGTAGTGATAATGACAAAGATGATGAAGGCAATGATAATGAAGAGGATGAAGAGGACGAAGAAGATGAAGAAGAGGATAGTAGCGATGATGATGGAAGTCAGAGTGAAGAATTTAACGATGGAACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03277	13164	21790	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003277s00039417.1	PF09649.5	CHZ	407	430	3.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.844
SRR1783600	control	22.002
SRR1783602	moderate drought stress	24.523
SRR1811619	moderate drought stress	24.105

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.848
DRR006520	Root Summer glycyrrhizin high producing strain	34.857
DRR006521	Root Winter glycyrrhizin high producing strain	19.959
DRR006522	Root Winter glycyrrhizin high producing strain	18.975
DRR006523	Root Summer glycyrrhizin low producing strain	41.858
DRR006524	Root Summer glycyrrhizin low producing strain	41.511
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.726
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.581

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.050
SRR2868004	Drought Stress (root)	34.505
SRR2967015	Control (root)	33.943

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.663
SRR9715740	Leaf	32.796
SRR9715741	Leaf	34.567
SRR9715739	Root	1.881
SRR9715742	Root	13.256
SRR9715743	Root	11.919

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	100.771
SRR8749028	MeJA induced 9h	77.241
SRR8749029	MeJA induced 9h	79.580
SRR8749030	Uninduced	55.861
SRR8749031	Uninduced	46.475
SRR8749032	Uninduced	36.523

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.403
SRR8400027	Control - Root	41.641