Gene detail

Gene detail information of Glyur003276s00039400.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39760.1	2.00E-151	BTB/POZ/MATH-domains containing protein
NR	XP_004503177.1	0	PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cicer arietinum]
Swissprot	tr\|O22286\|BPM3_ARATH	0	BTB/POZ and MATH domain-containing protein 3
trEMBL	tr\|I1LMJ1\|I1LMJ1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G34460.1}

Sequence

Transcript Sequence

>Glyur003276s00039400.1
AAAAACACGAAGGCAACGTAACGGTGGAGAGGAGAGAAGGAAGGGAGTGTGTGTGTGTGTGTGTTACCGGTGGCAGTAGAATCCTATAAATAGAACAAGAAGAAGAAGTTGGTAATGAACACTCTCTCTCTCTCTCTCTCTCTCTCTCATATTTCAATTAAAGTCCTCCCCTTCCATAAAGAGTTGGGTTAAACCTTAACAATAACACCAAGCAACAACTTGGTGTATCCGTCTGATTTTGATTCTCCGTTTCTTCTACCGACACTGCCTTCATTTCAATTCAATTCAAATTCAATTCTGAAGAATTCTTTGCTCCATTAGGGTCCCCCCCTCCCGCACCCACCCACCCTAATTCCCAATTTCATCGTGGGGTCGGGGGAAATTAGGGTTTTATCATGGTTTAGGGCTTTTCGTTCAATAGAAATTAGAATGGAAGAGAAGAAAGGGGAATCGTGGGAAGGGTGGTCATGGTCACGCTCGATCAGCGAAACGGTAAACGGTTCTCACGAATTGACGATAAAGGGGTATTCCCTTGCGAAAGGGATGGGTGCTGGGAAGTACATAACCAGCGACACTTTTAGCGTCGGTGGTTACGATTGGGCCGTTTACTTCTACCCCGACGGGAAGAACCCCGAAGACAACTCCATGTATGTCTCCGTCTTCATCGCTCTCGCCAGCGACGGAACCGACGTTAGGGCTCTCTTCAAATTGACGCTTCTCGATCAAACCCCAAAGGGNAACCACAAGGTCCATAGCCACTTCGATCGCCCTCTCGAGAGTGGTCCTTATACCTTGAAGTACAGAGGCAGCATGTGGGGTTACAAGCGTTTTTTTAGGAGGTCGTTGTTGGAGACCTCGGAGTATTTGAAGGATGATTGCCTTGTCATGCACTGCACGGTTGGCGTTGTCAAGACCCGTTTTGAGGGATCCAAAGAGGGTGTTGTTGTGCCCATTTCGGACATGGGTCGTGATTTTAAGGACCTGTTCGAGTCGCAAGTTGGTTGTGACATTGTTTTCAAGGTCAAGAGTGAGAGCTTCAGGGCTCATAAGTTNATCCTTGCTGCTCGGTCACCGGTGTTTAGGGCGCAGTTTTTCGGACTTGTTGGGGATCCTAGCTTAGAGGAAGTAGTAGTAGAGGATATTGAGCCCTTTATCTTCAAGGCCATGCTTCTCTTCATTTACTCAGACAAACTTCCTGACATCTATGAGGTNATGGGCTCAATACCCATGTGCTCTTATACTGTCATGGTGCAGCATCTCTTGGCTGCTGCNGATCTCTATAATCTTGATAGGCTAAAGCTGTTATGTGAATCAAAATTGTCTGATGAAATCAATACTGACACCGTAGCCACAACACTTGCCCTGGCTGAGCAACACCACTGTCCACAGCTTAAGGCAATCTGTTTAAAATTTATTGCAAATCCAACAAATTTGGGAGCTGTAATGCAGTCCGAAGCTTTTGTGCATTTGAAAGAGAGCTGCCCCTCAATGTTATTGGAATTGCTGGAGACATTTGCATCAGTGGATGATAACCCAAGCCAGACGTTGAGCAGGAAGAGAAGTGGCAGTAGCATATATGGGCAAGATTTAGCAGACGGAGGAGCAGCAGCGGAATCAGTTAATCCNAATGGCAGGCGTATCAGGAGGCGGACATAAGAGTAGTTTACAATCCGGATCTTCAACCCTGAAAGTGTGATATAGATAACCACCTAGTTATGGAACTACCTGTCAATGCNACGATTCACCTTTATCTTTTCGCCTGATCCCAGAGCTTTTATATGTGAAGTTTCTGGCTCCCACCTTGTCTGAAGGGGCTACTTTGGACAGCATTTTCAATGGTAGTCTGACATTAGAACAGTTCTAAATTTCTAATGTAGGGGTATATCATGTTTGATGACTTTAATAAAAGGTAAATAGCTGATATATGTTTTTTCAATGATGTCTACTCTTGGAAGGAAACAGTTTTCCTTTTAAAGTGATATATAGATGAATGGTAGANCTTTCCCCATTATAGTGCCAGGATTTTTGTAGTGGAGGTGCCACCTAAACCATTGGGTTATGTGTATGTCTGGTGTATGATTAAATCTGTTGGTGGCTCCTGTAATATCTGATTTTTTTTTCAGGTCCACTATGCCTTGNTCTGATCAACAACCTTGTCTGTATGTATATGTATCTGTAGAGTATTCAGACACAAAATAGCTGAAGGGTTTAATGAGTAGAAGAGAGAAAATTAAAAAGATGATTGTAGTTAAGGTATGGTCTCAAGCTATCAATAGAATTATTTATTCAACTTATCAGTAGGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03276	17366	22936	+

Gene family

Gene family	subfamily
Ubiquitin Family	BTB
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003276s00039400.1	PF00917.21	MATH	40	157	2.10E-09
Glyur003276s00039400.1	PF00651.26	BTB	182	299	3.30E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.596
SRR1783600	control	32.719
SRR1783602	moderate drought stress	47.393
SRR1811619	moderate drought stress	47.240

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.100
DRR006520	Root Summer glycyrrhizin high producing strain	43.104
DRR006521	Root Winter glycyrrhizin high producing strain	75.006
DRR006522	Root Winter glycyrrhizin high producing strain	73.035
DRR006523	Root Summer glycyrrhizin low producing strain	43.632
DRR006524	Root Summer glycyrrhizin low producing strain	43.896
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.552
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.987

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.366
SRR2868004	Drought Stress (root)	40.176
SRR2967015	Control (root)	41.237

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.179
SRR9715740	Leaf	32.393
SRR9715741	Leaf	44.045
SRR9715739	Root	38.696
SRR9715742	Root	37.448
SRR9715743	Root	35.006

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.861
SRR8749028	MeJA induced 9h	35.060
SRR8749029	MeJA induced 9h	24.853
SRR8749030	Uninduced	29.507
SRR8749031	Uninduced	20.466
SRR8749032	Uninduced	27.109

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.477
SRR8400027	Control - Root	34.856