Gene detail information of Glyur003273s00038201 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59500.1 | 4.00E-109 | Integral membrane HRF1 family protein |
| NR | KHN14470.1 | 9.26E-163 | Protein YIF1B [Glycine soja] |
| trEMBL | tr|I1KWP1|I1KWP1_SOYBN | 7.00E-163 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G28500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03273 | 17064 | 20457 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003273s00038201.1 | PF03878.10 | YIF1 | 46 | 147 | 3.60E-40 |
| Glyur003273s00038201.1 | PF03878.10 | YIF1 | 189 | 307 | 4.80E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.032 |
| SRR1783600 | control | 0.032 |
| SRR1783602 | moderate drought stress | 0.034 |
| SRR1811619 | moderate drought stress | 0.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.579 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.487 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.906 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.458 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.752 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.444 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.742 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.794 |
| SRR2868004 | Drought Stress (root) | 25.774 |
| SRR2967015 | Control (root) | 24.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.044 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.097 |
| SRR8749028 | MeJA induced 9h | 24.725 |
| SRR8749029 | MeJA induced 9h | 22.659 |
| SRR8749030 | Uninduced | 22.620 |
| SRR8749031 | Uninduced | 22.888 |
| SRR8749032 | Uninduced | 23.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.461 |
| SRR8400027 | Control - Root | 0.446 |