Gene detail information of Glyur003273s00038198 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20000.1 | 1.00E-46 | CDC27 family protein |
| NR | XP_004491774.1 | 4.01E-69 | PREDICTED: cell division cycle protein 27 homolog B-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8LGU6|CD27B_ARATH | 5.00E-59 | Cell division cycle protein 27 homolog B |
| trEMBL | tr|V7C251|V7C251_PHAVU | 4.00E-65 | Uncharacterized protein {ECO:0000313|EMBL:ESW23453.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03273 | 660 | 2956 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003273s00038198.1 | PF12895.2 | Apc3 | 15 | 88 | 6.20E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.656 |
| SRR1783600 | control | 5.501 |
| SRR1783602 | moderate drought stress | 6.978 |
| SRR1811619 | moderate drought stress | 7.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.811 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.776 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.040 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.769 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.281 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.146 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.833 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.640 |
| SRR2868004 | Drought Stress (root) | 4.614 |
| SRR2967015 | Control (root) | 5.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.434 |
| SRR9715740 | Leaf | 1.808 |
| SRR9715741 | Leaf | 3.177 |
| SRR9715739 | Root | 1.225 |
| SRR9715742 | Root | 4.558 |
| SRR9715743 | Root | 2.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.209 |
| SRR8749028 | MeJA induced 9h | 3.826 |
| SRR8749029 | MeJA induced 9h | 0.632 |
| SRR8749030 | Uninduced | 1.325 |
| SRR8749031 | Uninduced | 1.338 |
| SRR8749032 | Uninduced | 0.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.630 |
| SRR8400027 | Control - Root | 5.888 |