Gene detail information of Glyur003270s00039553 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22720.2 | 0 | Actin-like ATPase superfamily protein |
| NR | XP_004496146.1 | 0 | PREDICTED: probable tRNA threonylcarbamoyladenosine biosynthesis protein osgep-like isoform X1 [Cicer arietinum] |
| COG | NP_577901.1 | 5.00E-111 | DNA-binding/iron metalloprotein/AP endonuclease [Pyrococcus furiosus DSM 3638] |
| Swissprot | tr|O22145|OSGP2_ARATH | 4.00E-28 | Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial {ECO:0000255|HAMAP-Rule:MF_03179} (Precursor) |
| trEMBL | tr|I1NCH1|I1NCH1_SOYBN | 0 | Probable tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_03180} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03270 | 11447 | 13891 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003270s00039553.1 | PF00814.20 | Peptidase_M22 | 30 | 304 | 8.90E-92 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.515 |
| SRR1783600 | control | 4.413 |
| SRR1783602 | moderate drought stress | 6.441 |
| SRR1811619 | moderate drought stress | 6.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.689 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.002 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.715 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.926 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.086 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.580 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.646 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.232 |
| SRR2868004 | Drought Stress (root) | 12.588 |
| SRR2967015 | Control (root) | 14.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.299 |
| SRR9715740 | Leaf | 11.702 |
| SRR9715741 | Leaf | 10.710 |
| SRR9715739 | Root | 4.237 |
| SRR9715742 | Root | 5.920 |
| SRR9715743 | Root | 6.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.164 |
| SRR8749028 | MeJA induced 9h | 4.078 |
| SRR8749029 | MeJA induced 9h | 5.920 |
| SRR8749030 | Uninduced | 1.558 |
| SRR8749031 | Uninduced | 1.363 |
| SRR8749032 | Uninduced | 1.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.339 |
| SRR8400027 | Control - Root | 9.924 |