Gene detail

Gene detail information of Glyur003267s00040825

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	2.00E-106	NB-ARC domain-containing disease resistance protein
NR	XP_003599016.1	0	Cc-nbs-lrr resistance protein [Medicago truncatula]
COG	NP_485676.1	7.00E-10	regulatory protein [Nostoc sp. PCC 7120]
Swissprot	tr\|Q7XA39\|RGA4_SOLBU	0	Putative disease resistance protein RGA4
trEMBL	tr\|G7IZD1\|G7IZD1_MEDTR	0	NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:AES69267.2}

Sequence

Transcript Sequence

>Glyur003267s00040825.1
ATGGCTGAGGCTGTAATTGAAGTTGTCCTTGAGAATTTGAGCTCACTTGTTCAAAAGGAGTTTGGCCTATTTATAGATGCTGAGGAGAAACAATTCTCAAACAGAGCTATAAAGGATTGGCTACAAAAGCTAAAAGATGCTGCTCACGTCCTGGATGACATCTTGGATGAGTGTGCCACCAAAACACTGGAGTTGGAGTCTCAGGGATTCAAGGGTGGACTGTCCTGCAAGGTAAAAAGCTCTTGCTTGTCCTCTTTTCATCCCAAGCATGTTGCTTTCCGATACAAAATTGCTAAGAAAATGAAAAGAATAAGAGAGAGGTTAGATGAAATTGCTGAAGAAAGGGGTAAGTTTCATTTGACTGAGACGGTTAGAGAGAGGAGAGGTGGAGTCCTTGACTGGCGCCAAACCACCTCAATTATCACTCAACCTCAAGTCTATGGAAGAGATGAAGATAAGGATAAAATTGTAGACCTTTTGGTTGGTGATGCTGCTGGTTTTGAGGATTTATCCGTCTATCCAATAGTAGGGCTTGGTGGACTTGGAAAGACAACACTTGCCCAACTCATCTTCAATCATGAGAGGGTAGTCAACCACTTTGAGATGAGAATTTGGGTGTGTGTTTCTGAAGATTTCAGTTTAAAGAGAATGACAAAAGCCATCATAGAATCGGCATCTGGGCATCCTTGTGCGGAGTTGGATTTAGAGCCGCTACAACGAAAACTTCTGGATTTACTGCAAAGACAAAGATATTTGCTTGTTTTGGATGATGTTTGGGATGATGAACAAGATAATTGGCAGAGGTTGAAATCTGTATTGGCTTGTGGAGGAAGGGGTGCTTCAATTTTGGTCACTACTCGTCTTCCAAAGGTTGCAACAATCATGGGAACAATGCCTCCTCATGATTTATCAATGCTCTCTGACAATGACTGTTGGGAATTATTTAAACAACGAGCCTTTGGACCAAGTGAGGATGAGCGAGCAGAGCTTGTGGTCATAGGGAAGGAGATAATAAAGAAGTGTGGGGGAGTGCCTCTTGCGGCAATAGCATTGGGAAGTCTTTTGCGTTTTAAAAGAGAGGAGAAAGAGTGGCTCTATGTCAAGGAAAGCAAGCTATGGAGTTTACAAGGTGANAAATATGTCATGCCTGCCTTGAGATTGAGTTACTTGAACTTGCCAGTAAAATTGAGACAATGTTTTGCATTTTGTGCACTATTTCCCAGAGATGAAAAAATAAAAAAGCAATTTCTAATTGATCTCTGGATAGCTAATGGCTTTATTTCATCCAATGAAATGTTGGAAGTGGAAGATATTGGCAATGAGGTTTGGAATGAATTATACTGGAGATCATTTTTCCAAGACATTGAGATAGATAAACTTGGCAAAATTACAAGTTTCAAAATACATGATCTCNTTCATGATCTTGCTCAATCTNTTACAGACAAGGTCTGTTGCATTACANATGACACTGACATATCTAGTGCTTCTGGAAGAATCCGCCATCTCTCAGTTTATAGGTCAAAGTCACTTGGTAAAGTCAATTTAATTCAGTTGTATGGTGTCAAATCATTGAAGACTTGTATAACGCAATGGACTACTTGTGTTGACCAACTTTCATGTCATGTGTTGAAATGTTATTCTTTGNGAGTGCTTGACTTTGAAAGAAGAAAAAAGTTGTCATCTTCAATTGGTCGTTTAAAACATCTAAGGTACTTNAATCTTTCTTGGAGTGACTTTAAAACTCTTCCAGAATCCTTATGTAAGTTGTGGAATTTGCAGATNTTAAAGTTAGATTCNTGTATTTATCTCCAAAAATTGCCCAACAATTTGATATGCTTGAAAGCTCTGCAACATATATCTTTGAGGTANTGCCATTCACTATCATGCTTGTCCCCCCAAATAGGAAAGTTGACTTCCTTGAGGACTTTAAGCATGTATGTTATTGGCAAGAATAAGGGGTTATTTTTGNCAGAATTAGGACATTTGAACCTTAAAGGAGAGCTTCATATTAGGTGCCTAGAGAGAGTGAAAAATGTAAAGGATGCCAAAGAAGCCAATATGTCGAGTAAGAACCTAAACCAATTGTGTTTGTCGTGGGGGAGAAATGAAGAGTCCNACTCACAGGAAAATGTTGAGCAGATTCTTGAAGTGCTTCAACCTCATACCCAACAACTTCAAACTCTTCGTGTGGAAGGATATATAGGTGCCCATTTCCCACANTGGATGTCTAGTCCTTCTCTGAAAGATTTAAGTTTTTTACAGCTTGTGGATTGTGAGAGCTGTATACACCTTCCAAAGCTAGGGAAACTACCTTCTCTAAAGAGTCTAACAATATCCAACATGACTCAAGTGATATACATAGACGAGGAATCATATGATGGTGGAGTTGCGGTTGGTTTCATGGCACTAGAATTTCTGTTAGTGGAGAAGCTACCAAAACTGACAAGGTTATCAATGCAAGATAGAGAAAACATGTTCCCGTGCCTTTCAAGACTTCAAATTANTGAATGTCCTAACTTTTTGGGTTTGCCTTGTCTTCCATCTCTCAATGATTTGCGTANACGAGGGAAATGCCACCATGATTTACTAAGTTCAATTCATAAAATGCATAGTCTTGAATCCCTTTGGCTCAAAGATAATGAGGAGCTAACTTGCTTTCCAGATGGGATGCTACAAAACCTCACTTCTGTAAAGGCGCTGTCCATTTTTGGGTTCTCCNAACTTAAGCAACTCTCAACTGAAATCATTAGCCTAAATGTTATCCAGGAACTACATATTACCGATTGCAAGAACCTGGAGTCATTGACAGATGAAGTATTACAAGGGTTGCACTCTCTTAAGACATTTGTAATTTGGAACTGCCAAAAGTTCAATGTGTCACCGAGCTTTCAGTACCTCACTTGTCTTGAGAAGTTGTTGATTCATAGTTGCTCAGAAATTGAAGGTTTGCAAGAGGCTTTACAACATATGACTGCGCTTCGACTATTAGCATTGTACAATCTTCCGAACCTAACATCCTTGCCTAACTGCTTTGGAAACCTAGGCTTGCTTCAGGAATTAACTATTTCTCAGTGTCCAAATTTGACGTGTCTTCCAATGAGCATTCAATGTCTGACTAGTCTTAAAAGTTTGGGAATTTATGGTTGCACTGAGTTAGGGAAACGATGTATCAAGGAAACAGGTGAGGATTGGCCAAAAATAGCACACGTTCAGCATATTGAAATACATTACACGGGAATATACTGGGAAGGACGCGGAGGAAATAGTTATGGTGCACGCGTATGTTAG

Protein Sequence

>Glyur003267s00040825.1
MAEAVIEVVLENLSSLVQKEFGLFIDAEEKQFSNRAIKDWLQKLKDAAHVLDDILDECATKTLELESQGFKGGLSCKVKSSCLSSFHPKHVAFRYKIAKKMKRIRERLDEIAEERGKFHLTETVRERRGGVLDWRQTTSIITQPQVYGRDEDKDKIVDLLVGDAAGFEDLSVYPIVGLGGLGKTTLAQLIFNHERVVNHFEMRIWVCVSEDFSLKRMTKAIIESASGHPCAELDLEPLQRKLLDLLQRQRYLLVLDDVWDDEQDNWQRLKSVLACGGRGASILVTTRLPKVATIMGTMPPHDLSMLSDNDCWELFKQRAFGPSEDERAELVVIGKEIIKKCGGVPLAAIALGSLLRFKREEKEWLYVKESKLWSLQGXKYVMPALRLSYLNLPVKLRQCFAFCALFPRDEKIKKQFLIDLWIANGFISSNEMLEVEDIGNEVWNELYWRSFFQDIEIDKLGKITSFKIHDLXHDLAQSXTDKVCCITXDTDISSASGRIRHLSVYRSKSLGKVNLIQLYGVKSLKTCITQWTTCVDQLSCHVLKCYSLXVLDFERRKKLSSSIGRLKHLRYXNLSWSDFKTLPESLCKLWNLQXLKLDSCIYLQKLPNNLICLKALQHISLRXCHSLSCLSPQIGKLTSLRTLSMYVIGKNKGLFLXELGHLNLKGELHIRCLERVKNVKDAKEANMSSKNLNQLCLSWGRNEESXSQENVEQILEVLQPHTQQLQTLRVEGYIGAHFPXWMSSPSLKDLSFLQLVDCESCIHLPKLGKLPSLKSLTISNMTQVIYIDEESYDGGVAVGFMALEFLLVEKLPKLTRLSMQDRENMFPCLSRLQIXECPNFLGLPCLPSLNDLRXRGKCHHDLLSSIHKMHSLESLWLKDNEELTCFPDGMLQNLTSVKALSIFGFSXLKQLSTEIISLNVIQELHITDCKNLESLTDEVLQGLHSLKTFVIWNCQKFNVSPSFQYLTCLEKLLIHSCSEIEGLQEALQHMTALRLLALYNLPNLTSLPNCFGNLGLLQELTISQCPNLTCLPMSIQCLTSLKSLGIYGCTELGKRCIKETGEDWPKIAHVQHIEIHYTGIYWEGRGGNSYGARVC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03267	2317	5678	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003267s00040825.1	PF00931.17	NB-ARC	150	430	4.60E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.583
SRR1783600	control	2.629
SRR1783602	moderate drought stress	4.412
SRR1811619	moderate drought stress	4.342

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.563
DRR006520	Root Summer glycyrrhizin high producing strain	3.691
DRR006521	Root Winter glycyrrhizin high producing strain	3.002
DRR006522	Root Winter glycyrrhizin high producing strain	3.021
DRR006523	Root Summer glycyrrhizin low producing strain	2.606
DRR006524	Root Summer glycyrrhizin low producing strain	2.531
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.234
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.239

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.216
SRR2868004	Drought Stress (root)	3.582
SRR2967015	Control (root)	3.890

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.451
SRR9715740	Leaf	4.466
SRR9715741	Leaf	3.800
SRR9715739	Root	0.517
SRR9715742	Root	2.646
SRR9715743	Root	1.716

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.852
SRR8749028	MeJA induced 9h	1.609
SRR8749029	MeJA induced 9h	0.335
SRR8749030	Uninduced	0.673
SRR8749031	Uninduced	0.453
SRR8749032	Uninduced	0.304

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.716
SRR8400027	Control - Root	4.791