Gene detail information of Glyur003253s00045908 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27650.1 | 2.00E-54 | LOB domain-containing protein 25 |
| NR | XP_003548568.1 | 2.90E-82 | PREDICTED: LOB domain-containing protein 25-like [Glycine max] |
| Swissprot | tr|Q8L8Q3|LBD25_ARATH | 3.00E-68 | LOB domain-containing protein 25 |
| trEMBL | tr|K7MFN9|K7MFN9_SOYBN | 8.00E-83 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G07770.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03253 | 24644 | 25075 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003253s00045908.1 | PF03195.9 | DUF260 | 10 | 108 | 1.40E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.005 |
| SRR1783600 | control | 0.579 |
| SRR1783602 | moderate drought stress | 1.538 |
| SRR1811619 | moderate drought stress | 1.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.235 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.808 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.011 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.764 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.784 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.203 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.480 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.264 |
| SRR2868004 | Drought Stress (root) | 1.150 |
| SRR2967015 | Control (root) | 0.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.231 |
| SRR9715740 | Leaf | 2.846 |
| SRR9715741 | Leaf | 3.306 |
| SRR9715739 | Root | 0.151 |
| SRR9715742 | Root | 0.463 |
| SRR9715743 | Root | 0.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.523 |
| SRR8749028 | MeJA induced 9h | 4.747 |
| SRR8749029 | MeJA induced 9h | 10.098 |
| SRR8749030 | Uninduced | 1.346 |
| SRR8749031 | Uninduced | 1.650 |
| SRR8749032 | Uninduced | 0.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.554 |
| SRR8400027 | Control - Root | 0.936 |