Gene detail

Gene detail information of Glyur003251s00036741

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04550.1	6.00E-42	Protein of unknown function (DUF668)
NR	XP_004497596.1	0	PREDICTED: uncharacterized protein LOC101511231 [Cicer arietinum]
trEMBL	tr\|K7LHS1\|K7LHS1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G07530.2}

Sequence

Transcript Sequence

>Glyur003251s00036741.1
ATGGGGGGTGAAACAGTGAATGGGACATGGCTCGGACGTGGTTTTTGGCCAGTTTCTCGCAAGAGTAGTGCTTCAGATGACAACAAGGATGCAATTATTGGGTTCATGGCATTTGAAGTTGCAGGGTTAATGTCAAAGGTGGTTAATTTATGGCATTCTTTGAGTGACAGAGAAGTAATGAATCTTAGAGAATGGATAGCAAACTCAATTGGGGTCAAAATGTTAGTGTCAGAGGATGAACATTTCTTAATGGAACTTGCATGCAATGAGATACTCAATAGCTTTGAATCTGTAGCACAATCTGTGGCCAGATTAGGGAAGAGGTGTAGGGATTCAGTATATCATGATGGCTATGAAAGTTTTGTTCATAACCCTGGTCAAAACTATCTCCAATGGTCAGGNTGGGAATATAGATGGAAAAAAATGGAGAGAAAAGTGAAGAAAATGGAAAGGTTTGTTGCTGCAATGTCACTGTTGTCNCAAGAGCTTGAGGTACTACAAGAGTGTGAACAAACTTTTAGGAGAATGAAGGTGAATCCTGAGGTTAGTAGTGTGAAATTGCTCAAGTTTAAGAAGAAGGTCAATTGGCAGAACCAGCAAGTGCAGAATCTGAAAGACATGTCTCCTTGGAATAGAAGTTATGACTATATTGTAAGGNTGTTGGTAAGATCAATGTTTACCATTCTTGAGAGAATCATAATGGTGTTTGGTAAAAATAGTCACCTACCAATTCAAAAGCAACAAAATTATGATTCCCCCACAATGAATACTAATATTAACCATCTTGCACGCAACCATTCGTTCCCCACTCCTCCCTTGCATTCTTCTGTTCTTCCTTCTGGGTGCATAGTTGTTAACAACAAGAGCAAGAAAAAGAAGAAGAAAGAGCAGCAAGTAGTGCTTCCTTCACAATCACAATCTTTAGAAGGCAAGCAATTGAAACATTTTGGGTCCTTCAAAGGGTGCATGTCAGTTGGAAATGATTCTCCTATTGTACAAACCTGTATACCAACCAATGTTGATGATTGTCATGTGAANAACATTGATGTTAACAAGAAAACANTGGATGAAAAATTNTCTCTTTTTCACAGAAGTAGAGTGTATTTGAAACTATCTCAAAAGGGTTGTTTAAAGCCAGCACCTTTCACCCTTGGTGATGTGGGTTTAGCTCTACATTATGCAAATGTGATTGAATTGATAGAGAAGATAGTGTCATCACCTCAAACCATTGATCTTCAAACAAGAGATGACTTGTACAATATGCTGCCAACAACCATAAGAACTTCTCTGAGGGGTAAGTTAAAGTGGTATGCAAAATGTACTAATTACCCTGCAGTTGAAATAGAATGGAGTGTGGTACTCACACAGATATTGGAGTGGTTAGCACCATTGGCACACAACATGGTGAGGTGGCATTCTCAGAGGAATTTTGAGAAGGAGCATGTTACTACTTTGAAAGCAAATGTTTTACTTGTTCAGACTCTTTATTTTGCTAACCAGGCAAAAACTGAAGCTGCAATTGTTGAACTCCTTGTTGGTCTTCATTATGTGTGTAGGATTGATAGAGAGGCTCGGTTGAGAGATACAAGGGAGTTTGTAGGGTCTAGATCGTTTAAGAAAGAATTAGTTGTTGTACCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03251	12164	13804	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003251s00036741.1	PF11961.3	DUF3475	36	91	1.10E-23
Glyur003251s00036741.1	PF05003.7	DUF668	383	470	1.40E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.178
SRR1783600	control	0.201
SRR1783602	moderate drought stress	0.275
SRR1811619	moderate drought stress	0.261

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.323
DRR006520	Root Summer glycyrrhizin high producing strain	0.360
DRR006521	Root Winter glycyrrhizin high producing strain	0.408
DRR006522	Root Winter glycyrrhizin high producing strain	0.398
DRR006523	Root Summer glycyrrhizin low producing strain	2.405
DRR006524	Root Summer glycyrrhizin low producing strain	2.199
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.599
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.686

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.782
SRR2868004	Drought Stress (root)	6.840
SRR2967015	Control (root)	6.332

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.418
SRR9715740	Leaf	6.511
SRR9715741	Leaf	20.843
SRR9715739	Root	0.068
SRR9715742	Root	1.467
SRR9715743	Root	0.915

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.365
SRR8749028	MeJA induced 9h	13.897
SRR8749029	MeJA induced 9h	10.796
SRR8749030	Uninduced	39.643
SRR8749031	Uninduced	78.415
SRR8749032	Uninduced	43.056

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.613
SRR8400027	Control - Root	2.391