Gene detail

Gene detail information of Glyur003250s00041820

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04120.1	7.00E-51	glyceraldehyde-3-phosphate dehydrogenase C subunit 1
NR	BAJ10476.1	4.68E-63	glyceradehyde-3-phosphate dehydrogenase [Brassica rapa subsp. chinensis]
COG	YP_006409680.1	4.00E-53	glyceraldehyde-3-phosphate dehydrogenase, type I [Alistipes finegoldii DSM 17242]
Swissprot	tr\|P17878\|G3PC_MESCR	2.00E-63	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
trEMBL	tr\|D7UNZ6\|D7UNZ6_BRARC	2.00E-63	Glyceradehyde-3-phosphate dehydrogenase {ECO:0000313\|EMBL:BAJ10476.1} (Fragment)

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03250	5090	6183	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00134	GAPDH, gapA	EC:1.2.1.12	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glycolysis / Gluconeogenesis	map00010
			Carbon fixation in photosynthetic organisms	map00710
			HIF-1 signaling pathway	map04066
			Alzheimer's disease	map05010

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003250s00041820.1	PF02800.15	Gp_dh_C	19	129	3.20E-40

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	2.285
SRR1783600	control	6.460
SRR1783602	moderate drought stress	6.890
SRR1811619	moderate drought stress	7.010

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.193
DRR006520	Root Summer glycyrrhizin high producing strain	2.500
DRR006521	Root Winter glycyrrhizin high producing strain	1.465
DRR006522	Root Winter glycyrrhizin high producing strain	0.995
DRR006523	Root Summer glycyrrhizin low producing strain	2.603
DRR006524	Root Summer glycyrrhizin low producing strain	1.898
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.012
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.551

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.216
SRR2868004	Drought Stress (root)	0.207
SRR2967015	Control (root)	0.164

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.462
SRR9715740	Leaf	0.108
SRR9715741	Leaf	0.452
SRR9715739	Root	0.088
SRR9715742	Root	0.206
SRR9715743	Root	0.243

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.022
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.018
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.009

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.053
SRR8400027	Control - Root	0.096