Gene detail

Gene detail information of Glyur003247s00040997

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14710.1	2.00E-20	RNI-like superfamily protein
NR	XP_006601071.1	1.13E-117	PREDICTED: F-box/FBD/LRR-repeat protein At3g14710-like [Glycine max]
Swissprot	tr\|Q9LUC4\|FDL43_ARATH	3.00E-22	F-box/FBD/LRR-repeat protein At3g14710
trEMBL	tr\|A0A072VK28\|A0A072VK28_MEDTR	1.00E-116	F-box/RNI/FBD-like domain protein {ECO:0000313\|EMBL:KEH38500.1}

Sequence

Transcript Sequence

>Glyur003247s00040997.1
ATGGAGTCTGGTTTAACTGTTGCTAATAGCTCTGGCAAACCAAAGGAAGAGCCTCATAAGAAGGAGAAGGCAAATGAAGGTGAGGACATAATCAGCAACCTACCCGAATCACTTATCAGTCGGATTCTCTCTTTTCTCCCAACAACCGAAGATGCAGTTCTTACGAGTGTGTTATCCAAGAGATGGATATACCGCTGGACAACCATCAACAAGCTGGTCTTAGATGACAGTGTGTACCATCCTCCCATCAAGAAAGTAGGTGGAACTTTGTTCCTTCGTAACTTGACACATTATCCGTTCTATTCTCGCAACCNGAGAAGGAGAAGAGATAGAGATCAGCAGCACTTTGTTAACTTTGTGAACAGGGCACTTCTTCTTACTAAAGGTGCAAGCATGGAAAGTATCTCTCTTTTTATCGAGGATGAATATGATGTATCCCTTGTAAATACATGGCTCTCTAGCATCTTTCACCGGAGTGCAAAACATCTTGAAATCTATTTACATGGTGAAAAAATCCCCTTCTCCCAACTTNGTTCTCATTCTCTTTTCAACTCCATATCATTAGAAGAATTGTTACTCATGACGTATGGCAGTGAAATAAAGATTCCCACCACCCATGTTCATTTTGGGTACCTAAAATCCCTCACGTTCTCTGGAATTGATTTTACCGTTGACTCCTCCGATGACCATTTGAGTCTTAATTTACGAGTCCTCAAAATGTTTAAGACAGTCAACTGCACTTGGATAAATGCAAAGGGCATCACTGTAGAAGCGCCTTTACTTGAAACCATTTGCATAGAACAAAATCTTGATTCGGCATCTGATGAGCNGNATCCGTCCTCAGCTTATAATGCTTTGGCTTACGTCATTTTAAATCNGTCCGGGGATGTTGTTCCAGAATCAGTGTCTGGCGCTTTCCTCCTTCTCAAACAGTTAAGTCAAATGAAGTGTATCAAATTTTATGGCGCGGCGGTTCTGACACAACCAGAGTTGGATATTCTGCCTGTATTTGCAAAGTTAAGCCACTTGGAGATTGGCTGGGTTACTGGTGAAGTTTTGTTAGGCTTACTTCAAAAGTCACCAGTTCTCAAGACTCTAGTTGTCAAGGGAATATCTAAATTCGACCAAGATCTTTCCAATTCTGTTGTTGTGCCCGAATGTTTGGCATCTACTTTCCAGGTTGTGAAATTTGAAGAAATTGATGGAGACGAGCATGAGCTGTTTTTAGCTAAATATTTTATGGAAAATGGTATGGTGCTGAAAAGGATGAGTTTCTCCCGTTTTAGCNAATCTAAGGTTATGGAGGAATTTAAGGAGAAGCTTTTCTCATATAAAAAAGCTTTCTCTAATAAGCAAGTGGTACAGGTCTACAATCAAATTGGTTGTGGGAAATTGTTACAGGTAAACATGGAGTCTGGTAATTCAACTGTTACTACCGGCTCTGGCAAACAAGAGAAAAAGGATCATGAGAAGGAGAAGGAAAATGAGGGTGAAGACATAATCAGCAAGCTACATGAATCAATTATCAGNCGCATTCTGTCTTTTCTCCCAACCGAAGATGCAGTTGGTACGAGTGTGTTATCAAAGAGCTGGAATATGTACCACTGGACAACCATGACCATCACTAAGCTGGACCTGAATGATAGTGTTTACTATNNTCGCAACTGGGGAAGGAGAAGAGATGGAGATCAGCAGCACTTTGTGAACTTTATGAACAGGGCAATACTTGTTCTTACTAAAGGTGCAAGCAATATGGAAAGTATCTCTCTTACTATCATCAAGGATAAATATGATGCATCCCTGCTAAATACATGGGTCTCTTCCATCTTTCACCGTAGTCCAAAACACGTTGACATCCGTATGGACTATCCATTTTCTGAAGGAACTCCTCCCTTCTCCCCACTAACTTCCCATTCTTTTGTCAACTCCAGTACGTCATTAGAAGAATTGTCTCTCCAGGGTTGCTGGGGAATAAAGATTCCCACCACTCATGTTCATTTTGGGTGCCTAAAATCCCTCATGTTCAGGGGAATTGAATTCACCGTTGACTCCTCCGGTGGTGATCATCTGACCCTTAGTTTACCGGTACTTAAAAAGTTTGAGATGTACGAATGCAGGTGGTTAAATGCAAAGGACATCACTGTAGAAGCACCTCTACTTGAAATCATTGACATAGTTAAAAGTTATAATTACTCGGCTTCTGGTGAGCCACCTGGCAGTGCAATCACATTTTCTGTGTTGCATCTGAAAAAATTCAGTTATAGTGGTTGTTATGATACATCACGAACAGTTACTCTGTCAGATCCGTCCTCAGCTCATAATGCTTCGGCTCGCGTCAATTTTTATTGCTCGAGGGGCGCCGTTCCGGAAACAAGACGTGTTTTACTCCTCCTCAAACAATTCAGCCAAATGAAATGTATCGATTTTATTGGGTTGCAGTTTCTGACACTACCAGAATTGGCTATTCTGCCCGTATTTGCAATGTTGANCCATTTGGTGCTTCGCTCATTTACTGGGGAAGTTTTGTTAGGCTTACTTCACAGGTCACCAGTTCTCAAGACTCTAACTCTCGAGGGAATATGTAAATTCAGCCAATTAGATCTTTTCAATTCTACTGCTGTGCCCGATTGTTTGGCATCTACTCTCCGGATTGTGAAATTTGAAGCAGTTACTAAAGAGAAGCATGAGCTGTGCATGGTTTTGGCTAATTATTTTATGGAAAATGGTATGGTGATGGAGAAAATTAGTTTCTCCCCGCCTTCTAGATGGCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03247	6541	23192	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003247s00040997.1	PF08387.5	FBD	383	426	9.40E-11
Glyur003247s00040997.1	PF08387.5	FBD	872	918	6.20E-06
Glyur003247s00040997.2	PF08387.5	FBD	446	506	2.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.603
SRR1783600	control	1.591
SRR1783602	moderate drought stress	1.300
SRR1811619	moderate drought stress	1.358

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.790
DRR006520	Root Summer glycyrrhizin high producing strain	1.935
DRR006521	Root Winter glycyrrhizin high producing strain	1.054
DRR006522	Root Winter glycyrrhizin high producing strain	1.043
DRR006523	Root Summer glycyrrhizin low producing strain	1.225
DRR006524	Root Summer glycyrrhizin low producing strain	1.051
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.662
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.744

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.676
SRR2868004	Drought Stress (root)	2.454
SRR2967015	Control (root)	2.901

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.484
SRR9715740	Leaf	1.510
SRR9715741	Leaf	1.148
SRR9715739	Root	1.698
SRR9715742	Root	0.403
SRR9715743	Root	0.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.255
SRR8749028	MeJA induced 9h	1.936
SRR8749029	MeJA induced 9h	0.644
SRR8749030	Uninduced	1.061
SRR8749031	Uninduced	0.590
SRR8749032	Uninduced	0.594

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.874
SRR8400027	Control - Root	2.507