Gene detail

Gene detail information of Glyur003242s00036201.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52440.1	9.00E-28	Dof-type zinc finger DNA-binding family protein
NR	XP_006589880.1	7.12E-124	PREDICTED: dof zinc finger protein DOF3.5-like [Glycine max]
Swissprot	tr\|Q9SVC5\|DOF35_ARATH	3.00E-40	Dof zinc finger protein DOF3.5
trEMBL	tr\|K7LI29\|K7LI29_SOYBN	8.00E-124	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G10142.1}

Sequence

Transcript Sequence

>Glyur003242s00036201.1
ATGGAGAGTGGGTGGAAGCCTAATGTTGAGATATCACCGAATTGTCCAAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGCTTAACTCAACCAAGGTATTTCTGCAAGGGATGCAGAAGGTACTGGACCAAAGGTGGGTCCCTCAGGAATGTCCCAGTTGGTGGTGGATGCAGGAAGAACAGAAGAGGTAACAAGACCTTATTAAGATCACAATCCAATATTGATGGTCTCACTTTCAAGAATTCACCCAATTGTGACAACAGTGGTGCTTCAACAACAATAGATAACCCAATTTGGCATTCTTATGATCTTCTTCCTAGGAGGACTACTAATTCATCATCATCTCATAGCTCCTCAGATGGACCCANTATTGATCTTGCACTAGTTTATGCAAATTTCCTCAATCAAAAGCCTCATCCTGGTGGAGGAGTAGGACTTGATCATGATAATCATCTAGATCAAATTCAAACAGCTTTTGATCCTAATTCTATAGAAAAGNCAAGGCTAATATCAAACACAGAAGTTGTTGGCCCAAGTACTTTGCCTGCAGAAGAACTTGGTCTCACAGGGTGTTCGAATATTATTACTCAACAACAACCATCCACAGAAGTAATAGAACCCCATTTTGTTGGTGAGGGAAATAATAACCAATTATACTGTAGTGAGTTCAACAACTCTATGCAGACCCTTCAAAATGATAGAAGTGATCAGCAATGTGGTAATCATGATGGGGTGAATTTTGAGCTTCCACCTTTGCCAGGTGAAGAGGAAGAAGCATCACATGATGATGTGATGTGGTCCAATTCTGAGATGATGATNATAAACCATCCATTTCATCAAGTCACCCAACAACAACCACTTCTTGGACCTCAAATTCATGATGATGATGATGCAGACTTGTTGATTGGTAATTGGAGCCCTTTTGATTTGCCAACAAGGGATTCTTCTTTTTCCAGGCCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03242	1529	2506	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003242s00036201.1	PF02701.10	zf-Dof	13	67	3.40E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.004
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.095
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.095

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.235
SRR2868004	Drought Stress (root)	0.430
SRR2967015	Control (root)	0.120

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.030
SRR8749028	MeJA induced 9h	12.553
SRR8749029	MeJA induced 9h	10.665
SRR8749030	Uninduced	1.882
SRR8749031	Uninduced	0.952
SRR8749032	Uninduced	0.997

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.034
SRR8400027	Control - Root	0.024