Gene detail information of Glyur003239s00035878 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 5.00E-31 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | KEH34062.1 | 1.38E-90 | disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula] |
| COG | YP_001520699.1 | 8.00E-09 | TPR domain-containing protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 5.00E-34 | TMV resistance protein N |
| trEMBL | tr|A0A072UWS1|A0A072UWS1_MEDTR | 5.00E-91 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:KEH34062.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03239 | 16222 | 17034 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003239s00035878.1 | PF00931.17 | NB-ARC | 14 | 62 | 6.90E-07 |
| Glyur003239s00035878.1 | PF00931.17 | NB-ARC | 82 | 224 | 3.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.100 |
| SRR1783600 | control | 0.131 |
| SRR1783602 | moderate drought stress | 0.021 |
| SRR1811619 | moderate drought stress | 0.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.180 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.145 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.622 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.084 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.967 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.145 |
| SRR2868004 | Drought Stress (root) | 0.137 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.846 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 62.046 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.911 |
| SRR9715743 | Root | 1.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.252 |
| SRR8749028 | MeJA induced 9h | 2.845 |
| SRR8749029 | MeJA induced 9h | 0.762 |
| SRR8749030 | Uninduced | 3.274 |
| SRR8749031 | Uninduced | 0.100 |
| SRR8749032 | Uninduced | 0.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.024 |
| SRR8400027 | Control - Root | 0.000 |