Gene detail information of Glyur003239s00035877 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20935.1 | 3.00E-30 | |
| NR | XP_003601356.1 | 5.08E-67 | hypothetical protein MTR_3g079820 [Medicago truncatula] |
| trEMBL | tr|G7J6M5|G7J6M5_MEDTR | 2.00E-67 | DUF3148 family protein {ECO:0000313|EMBL:AES71607.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03239 | 6041 | 7314 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003239s00035877.1 | PF11347.3 | DUF3148 | 62 | 123 | 3.70E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.421 |
| SRR1783600 | control | 2.458 |
| SRR1783602 | moderate drought stress | 6.038 |
| SRR1811619 | moderate drought stress | 5.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.761 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.568 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.150 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.557 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.911 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 162.973 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 162.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.458 |
| SRR2868004 | Drought Stress (root) | 1.752 |
| SRR2967015 | Control (root) | 0.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.461 |
| SRR9715740 | Leaf | 0.888 |
| SRR9715741 | Leaf | 66.079 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 3.604 |
| SRR9715743 | Root | 2.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.267 |
| SRR8749028 | MeJA induced 9h | 2.444 |
| SRR8749029 | MeJA induced 9h | 0.377 |
| SRR8749030 | Uninduced | 0.737 |
| SRR8749031 | Uninduced | 0.103 |
| SRR8749032 | Uninduced | 0.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.064 |
| SRR8400027 | Control - Root | 0.310 |