Gene detail information of Glyur003239s00035875.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20950.2 | 3.00E-78 | Glycosyl hydrolase family protein |
| NR | XP_003638320.1 | 1.30E-150 | Beta-D-glucosidase [Medicago truncatula] |
| COG | YP_003265703.1 | 3.00E-71 | glycoside hydrolase [Haliangium ochraceum DSM 14365] |
| trEMBL | tr|G8A1X0|G8A1X0_MEDTR | 5.00E-151 | Beta-D-glucosidase {ECO:0000313|EMBL:AES85458.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03239 | 242 | 1573 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05349 | bglX | EC:3.2.1.21 | Starch and sucrose metabolism | map00500 |
| Cyanoamino acid metabolism | map00460 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003239s00035875.1 | PF01915.17 | Glyco_hydro_3_C | 21 | 229 | 4.90E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.040 |
| SRR1783600 | control | 1.695 |
| SRR1783602 | moderate drought stress | 1.142 |
| SRR1811619 | moderate drought stress | 1.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.642 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.145 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.077 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.113 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.445 |
| SRR2868004 | Drought Stress (root) | 2.750 |
| SRR2967015 | Control (root) | 3.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.469 |
| SRR9715740 | Leaf | 3.384 |
| SRR9715741 | Leaf | 3.478 |
| SRR9715739 | Root | 1.742 |
| SRR9715742 | Root | 0.516 |
| SRR9715743 | Root | 0.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.014 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.057 |
| SRR8400027 | Control - Root | 7.969 |