Gene detail information of Glyur003238s00041876 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21880.2 | 6.00E-150 | lysm domain GPI-anchored protein 1 precursor |
| NR | XP_004500556.1 | 0 | PREDICTED: lysM domain-containing GPI-anchored protein 1-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q93ZH0|LYM1_ARATH | 0 | LysM domain-containing GPI-anchored protein 1 (Precursor) |
| trEMBL | tr|V7AVQ9|V7AVQ9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW09400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03238 | 20072 | 24051 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003238s00041876.1 | PF01476.15 | LysM | 112 | 154 | 1.90E-05 |
| Glyur003238s00041876.1 | PF01476.15 | LysM | 174 | 216 | 4.00E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 100.637 |
| SRR1783600 | control | 101.278 |
| SRR1783602 | moderate drought stress | 60.766 |
| SRR1811619 | moderate drought stress | 59.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 51.074 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.838 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.493 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.416 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.281 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.630 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.933 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 54.230 |
| SRR2868004 | Drought Stress (root) | 26.654 |
| SRR2967015 | Control (root) | 29.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.311 |
| SRR9715740 | Leaf | 5.799 |
| SRR9715741 | Leaf | 5.195 |
| SRR9715739 | Root | 50.499 |
| SRR9715742 | Root | 28.355 |
| SRR9715743 | Root | 31.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 54.921 |
| SRR8749028 | MeJA induced 9h | 19.253 |
| SRR8749029 | MeJA induced 9h | 30.100 |
| SRR8749030 | Uninduced | 1.621 |
| SRR8749031 | Uninduced | 1.004 |
| SRR8749032 | Uninduced | 2.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 59.165 |
| SRR8400027 | Control - Root | 60.626 |