Gene detail

Gene detail information of Glyur003237s00045127

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54250.2	0	cyclic nucleotide-gated cation channel 4
NR	XP_007132934.1	0	hypothetical protein PHAVU_011G137200g [Phaseolus vulgaris]
COG	YP_001839255.1	2.00E-17	putative cyclic-nucleotide-gated cation channel [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Swissprot	tr\|Q94AS9\|CNGC4_ARATH	0	Cyclic nucleotide-gated ion channel 4
trEMBL	tr\|V7AJ78\|V7AJ78_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04928.1}

Sequence

Transcript Sequence

>Glyur003237s00045127.1
CAAAAACAGGCAGCAGGGGCATGTTGGTACTTGTTGGGGATCCAGAGGGCAGCCAAATGTTTGAAAGAGCAGTGTGAGAAAACAAATGGTTGTGGCCNCAAAATCCTGTCTTGTCACAAGCCAATATATTATGGAAGCACTAGCTTAATGGATAGGGATAGAGCAAGATTGGCATGGGCAGAAAACAGGGAAGCAAGGTCTACATGCTTAAATGGCCCNGATAGCTATAACTATGGAGCTTACAAATGGACTCTTCAACTTGTCACTAATGATAACCGATTGGAAAAGATACTTTTCCCCATCTTTTGGGGCCTAATGACTCTCAGCACTTTCGGGAACCTAGAGAGCACAACGGAATGGCTAGAAGTAGTTTTCAACATCATTGTGTTGACTAGTGGACTTCTTCTTGTCACTATGTTGATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAGAAGCAAGCGATGCAATTGAAGATGAGGAATATTGATTGGTGGATGAGGAAAAGGCGCTTACCGCAAGGGTTTCGGCAACGCGTGCGTAACTNTGAAAGACACCGTTGGGCTGCTATGCGTGGAGTTGATGAATGTGAGATGACCAGAAATCTTCCTGAGGGTTTAAGGAGAGACATCAAGTATCATCTTTGTTTAGATTTGGTGAGACAGGTGCCCCTGTTTCAACATATGGACGATCTGGTTCTAGAGAACATCTGTGATCGTGTGAAATCTCTGATATTCACAAAGGGAGAAACAATAGCTAGAGAAGGGGACCCAGTTCAAAGAATGCTATTTGTGGTGAGGGGTCACCTTCAAAGCAGCCAAGTCCTAAGGGACGGGGTGAAGAGTTGCTGCATGTTAGGACCAGGAAACTTCAGNGGCGACGAGCTCCTTTCATGGTGTTTGAGGAGACCCTTCATAGAGCGCCTTCCACTATCTACCTCCACACTCATCACACTAGAGACAACAGAGGCATTTGGTCTCGAAGCAGAGGATGTGAAGTATGTGACACAACATTTCAGGTACACATTTGTNAAGGAAAAGGTGAAGAGGAGTGCTAGGTATTACTCACCAGGGTGGAGGACTTGGGCTGCTGTGGCCATTCAATTGGCATGGAGAAGGTACAAGCATAGGTTGACTTTGACTTCATTGTCTTTTATAAGGCCTAGGAGGCCCTTGTCTCGGTGCTCTTCCTTGGGAGAGGATAGACTTCGACTCTACACGGCTTTGTTAACCTCACCAAAGCCTAATCAGGATGATTTTGATGTTTGACAAACAAGATATATATGCATGCATGTGTGGATGTGAGTGTGGGAATTATTAATTTCTTAATATTGTAATGGTGGGAGAAATAAAAGCAAAAGAAGAATGTTGGCATGTTTTGTGTTGATTACTTATATTCAGGGAAATGGTAAGATGAAAAACGAGGAAAAGAAATTTATTGGATATATACTCNCTATTTGGCTAGATAGCCAACGATCATTATGGGGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03237	23370	26947	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003237s00045127.1	PF00027.24	cNMP_binding	199	289	7.40E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.932
SRR1783600	control	3.959
SRR1783602	moderate drought stress	14.268
SRR1811619	moderate drought stress	14.623

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.141
DRR006520	Root Summer glycyrrhizin high producing strain	7.734
DRR006521	Root Winter glycyrrhizin high producing strain	9.972
DRR006522	Root Winter glycyrrhizin high producing strain	9.847
DRR006523	Root Summer glycyrrhizin low producing strain	17.628
DRR006524	Root Summer glycyrrhizin low producing strain	18.092
DRR006525	Leaf Summer glycyrrhizin high producing strain	63.217
DRR006526	Leaf Summer glycyrrhizin high producing strain	63.221

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.737
SRR2868004	Drought Stress (root)	2.377
SRR2967015	Control (root)	2.155

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	147.063
SRR9715740	Leaf	163.760
SRR9715741	Leaf	166.246
SRR9715739	Root	9.428
SRR9715742	Root	20.377
SRR9715743	Root	17.930

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.042
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.727
SRR8400027	Control - Root	2.584