Gene detail information of Glyur003234s00039048 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67100.1 | 3.00E-06 | LOB domain-containing protein 40 |
| NR | XP_007139150.1 | 4.17E-35 | hypothetical protein PHAVU_008G005500g [Phaseolus vulgaris] |
| Swissprot | tr|Q9M886|LBD41_ARATH | 4.00E-11 | LOB domain-containing protein 41 |
| trEMBL | tr|V7B018|V7B018_PHAVU | 2.00E-35 | Uncharacterized protein {ECO:0000313|EMBL:ESW11144.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03234 | 8937 | 10351 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 100.925 |
| SRR1783600 | control | 103.254 |
| SRR1783602 | moderate drought stress | 46.667 |
| SRR1811619 | moderate drought stress | 46.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 178.010 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 176.760 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 889.288 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 863.089 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.460 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.582 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.699 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.302 |
| SRR2868004 | Drought Stress (root) | 30.152 |
| SRR2967015 | Control (root) | 47.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.739 |
| SRR9715740 | Leaf | 5.336 |
| SRR9715741 | Leaf | 2.865 |
| SRR9715739 | Root | 483.355 |
| SRR9715742 | Root | 322.024 |
| SRR9715743 | Root | 362.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 310.191 |
| SRR8749028 | MeJA induced 9h | 245.340 |
| SRR8749029 | MeJA induced 9h | 180.943 |
| SRR8749030 | Uninduced | 19.455 |
| SRR8749031 | Uninduced | 49.760 |
| SRR8749032 | Uninduced | 184.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 137.638 |
| SRR8400027 | Control - Root | 197.258 |