Gene detail information of Glyur003233s00040173 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18670.1 | 3.00E-31 | Ankyrin repeat family protein |
| NR | AES95705.2 | 4.33E-97 | ankyrin repeat protein [Medicago truncatula] |
| trEMBL | tr|G7KAX7|G7KAX7_MEDTR | 2.00E-97 | Ankyrin repeat protein {ECO:0000313|EMBL:AES95705.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03233 | 4427 | 11812 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003233s00040173.1 | PF13962.1 | PGG | 42 | 154 | 3.90E-21 |
| Glyur003233s00040173.1 | PF13961.1 | DUF4219 | 240 | 266 | 5.40E-08 |
| Glyur003233s00040173.1 | PF12796.2 | Ank_2 | 377 | 462 | 2.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.776 |
| SRR1783600 | control | 5.065 |
| SRR1783602 | moderate drought stress | 4.508 |
| SRR1811619 | moderate drought stress | 5.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.823 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.675 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.279 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.269 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.068 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.754 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.466 |
| SRR2868004 | Drought Stress (root) | 8.360 |
| SRR2967015 | Control (root) | 7.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.170 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 13.629 |
| SRR9715739 | Root | 0.012 |
| SRR9715742 | Root | 7.664 |
| SRR9715743 | Root | 5.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.752 |
| SRR8749028 | MeJA induced 9h | 1.367 |
| SRR8749029 | MeJA induced 9h | 1.412 |
| SRR8749030 | Uninduced | 2.466 |
| SRR8749031 | Uninduced | 1.447 |
| SRR8749032 | Uninduced | 2.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.757 |
| SRR8400027 | Control - Root | 7.248 |