Gene detail

Gene detail information of Glyur003232s00045337

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	1.00E-54	disease resistance protein (TIR-NBS-LRR class), putative
NR	KEH41547.1	0	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]
Swissprot	tr\|Q40392\|TMVRN_NICGU	3.00E-52	TMV resistance protein N
trEMBL	tr\|A0A072VIA7\|A0A072VIA7_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH41547.1}

Sequence

Transcript Sequence

>Glyur003232s00045337.1
GAATAAAGTTCTGGCTGGAATATTAGGGGATCAAAACTTGTACACCCGTATGAGTTCTACTTTTGTTGTAGAAAGGCTTCAACGTAAAAAGCTCCTCATCGTTCTTGATGATGTGAGTGATTCAAAACAAATAGAGTATCTTGTTGGAAAGAAAGATTGGTTTGGACCTGGGAGTCGAATAATAGTGACCACCAGAAATAAAAATGTGTTTAACAGAGGAGTTGATGGAGTATATCCAGTGATGGAGTTGAATTTTCATGAAGCACTGGAGCTTTTTAGCTTGAATGCCTTTCAGCAAGACCGTCCAATGAGGAAATACCAACAATTGTCAAGAAAGGCAGTAGGTTATGCTAAGGGCAATCCTTTAGCTCTTAAAGTTCTGGGTTCATATCCTTCTTCAAAACGACCAAAAGATTGGGAATGTGCATTGGAAAAACTTAAGAAAATTCCCAAAGCTGAAATATATCATGTGTTAAGATTGATTTATGAAGGATTAGACCGTGAAGAGCAGGATATATTTTTACATATTTCCCACTTTTTGAAAGTAGAAAGAAAAAGCCTTATAACAAGTATATTAGCTGGCTGGGGCTTTTCTGCAGATATTCGGATGAGAAGCCTTGAAGATAATTATCTTATAACTGTTTTAAAAGGCGATGAGGTACAGTCTGTACAGATGCATGATCTGATACAAGAGATGGGTCGCCAAATCGTCCATGAAGAATTCATGAAATTCATGAAAGCGGGAAAACAGAGTCGGTTGTGGCGTCCTAATGAAGTTTATGATGTCCTCAAGAATAACACAAGGTTGGAGGCCGACCTAGTTGAACAAATTGTTGAAGATATATTGCATAAATTGAACCGTATGAGCGCACATGTTCCAAAGGGGCTTGTTGGAATTACTCGACACATTGCACATGTGGAATCATTGTTATGCATGGGGTCAGATGATGTCCGTATTATTGGAATTTGGGGTATGGGTGGTATAGGTAAGACAACCATTGCAAATGCTCTCTGTGCAAAACTCTCTTCTCAATATGAGGGATGCTACTTTGTTGCCACTGTGAGGGAAGAATGGAAAAATCACAGAGAAAATGAGTTGCGGAATAAACAACTGATTGAGCTCCCAGATTTCTCTATGGCCTCAAAACTTGGAGAAGTACATCTTGATGATTGTACAAGTTTGTTGAATGTTCCTTCATCCATTTTGTCACTTGAAAGTCTGTTTGCATTAAATCTGAGAGGCTGTAAACAGCTTCGTTACATTCAAAGTGAGAAGCAATCCAGATCTCTTCAATGGCTTAATCTGAGAGGGTGCTCAAGACTTGTAAAGTATTCAGTTTTTTCAGAGAAATTGGAGTGCCTGAACTTAGATGGCACGGCACTTGAAGAACTTCCCTCATCAGTTATTGGTGTAGATTGTACCATTCAGCTTCTTGACTGTCCAAAACTTGAGAGATTACCTCCAGTTAATTGCATTTCCCTAGAAACCATATCGTTATCGAATTTAGGGATTGCAATGTTGCAAGACTCATTTGATAGGCTAAAGAAGAGATCATTGGTCAGACAGATTCAAAAGGAAGAAAAAATGTCTATTCGTCATTGTGGCTATTTGGGAAGATTTGATTTTTATAATTGCATAAAGTTGGACCAGATCGCATGCAATACTATTATGGAGGTGGCACTAATCAGAATCCAGCTAGCAGCCTACCTGTCATCAACAATTGAAGAATGTCATGATCCTTATTGTCAAACTAATGATGACCCTCAAGATTTTGTTTATATTTCCCGACCGGTTTATGTTACTCTACCGGGAAGTGAAGTGCCAAACTGGTTCGTGCATAAAAGAACAGACTCCTCGACCATAACTATAAAACTTTTTAAACGTTGGCTTGATTATTGCATATGCTCGGGCTTTGCTTTCTGTCTTGTTCTTGGACCATCCCACTCAAATAGGAAGAAAATTCATCATACTGATTTTATGGCGGGGTGTAGATACTATTTTGGAGACAAATATGCTGGAACTTGCATTATAAAGTCTTCTTGCATTTTTGATGCTGAATCAGATCAGTTATTGCTTTGGTATGACGTAGTAAGCAATGTACTTCCAGATGATGTGGTGATGGAGGTCTCCTTTGAGTTTTTTGTTACGCCTGCTCGTAGTACAGGGCTTCTTGTGAAACAGTGTGGAATTCGACCACTGCATGCTCCACTTGACTTAGACATCATGCACAGCTCATATGAAGAAGAAGTCAACAGCATTCCAAGGAATTATTCGCTTATTCGCTATTATGCTCATCCTCCTGACAGCCTTGGATTGCCATCTGAACGACAAACAATTTCTGGGTATCCCGATGGATGTGTCGGCTTTCCATTATTTTACTGTGCCAAGAATGTTGATACACTCAGAATGGAACACCACTGCTATCGTGATAGTGATGGAGTAGAAGTATTTGTCTATTTCGGCCTTGTTGGTGGTAGTCACCACCAACCACATGATCTGAGGTGTTTAGCCCAACTGCTTCAGCATCACTGTTGTTATTCTGGTGAACTCGTAGACAACATCGACGTCTTTTCCTCGCTCAGGAGATTGTCACTAAGGGGTTGCAATGTTGAGAGCTTGCCACCTAGCATCCAACATCTTTCAGTGCTGGAACATCTTGAATTAATTGATTGCAAGAGGCTTAGGTCTCTCCCAATGCTTCCACCATCGCTAAGGAGATTAAGGCTAATTGGTTGCAATGTTGAGAGCTTGCCACCTAGCATCCAGCATCTTTCAGTACTGGAAGATCTTGAATTAATTGATTGCAAGAGGCTTAGGTCTCTCCCAATGTTTCCACCATCACTAAGGGAGATTAAGGCTAATTGGTTGCAATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03232	139	10845	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003232s00045337.1	PF00931.17	NB-ARC	7	168	2.30E-25
Glyur003232s00045337.1	PF00931.17	NB-ARC	285	340	1.60E-07
Glyur003232s00045337.1	PF00560.28	LRR_1	843	864	0.014
Glyur003232s00045337.1	PF00560.28	LRR_1	887	908	0.45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.144
SRR1783600	control	3.045
SRR1783602	moderate drought stress	2.985
SRR1811619	moderate drought stress	3.039

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.870
DRR006520	Root Summer glycyrrhizin high producing strain	7.538
DRR006521	Root Winter glycyrrhizin high producing strain	0.803
DRR006522	Root Winter glycyrrhizin high producing strain	0.912
DRR006523	Root Summer glycyrrhizin low producing strain	4.135
DRR006524	Root Summer glycyrrhizin low producing strain	3.814
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.994
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.965

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.814
SRR2868004	Drought Stress (root)	2.771
SRR2967015	Control (root)	2.819

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.118
SRR9715740	Leaf	30.547
SRR9715741	Leaf	18.719
SRR9715739	Root	6.165
SRR9715742	Root	12.497
SRR9715743	Root	11.221

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.538
SRR8749028	MeJA induced 9h	22.604
SRR8749029	MeJA induced 9h	9.218
SRR8749030	Uninduced	25.295
SRR8749031	Uninduced	17.818
SRR8749032	Uninduced	14.267

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.396
SRR8400027	Control - Root	8.850