Gene detail information of Glyur003231s00044538 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05860.1 | 6.00E-37 | |
| NR | XP_003518163.1 | 4.32E-99 | PREDICTED: INO80 complex subunit D-like [Glycine max] |
| trEMBL | tr|I1JD22|I1JD22_SOYBN | 2.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G07570.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03231 | 12655 | 18854 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003231s00044538.1 | PF13891.1 | zf-C3Hc3H | 110 | 174 | 1.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.623 |
| SRR1783600 | control | 7.898 |
| SRR1783602 | moderate drought stress | 8.437 |
| SRR1811619 | moderate drought stress | 8.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.822 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.668 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.488 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.550 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.050 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.719 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.969 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.849 |
| SRR2868004 | Drought Stress (root) | 14.423 |
| SRR2967015 | Control (root) | 14.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.371 |
| SRR9715740 | Leaf | 8.086 |
| SRR9715741 | Leaf | 11.053 |
| SRR9715739 | Root | 5.491 |
| SRR9715742 | Root | 10.058 |
| SRR9715743 | Root | 8.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.200 |
| SRR8749028 | MeJA induced 9h | 7.434 |
| SRR8749029 | MeJA induced 9h | 11.898 |
| SRR8749030 | Uninduced | 10.429 |
| SRR8749031 | Uninduced | 11.448 |
| SRR8749032 | Uninduced | 25.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.797 |
| SRR8400027 | Control - Root | 9.304 |