Gene detail information of Glyur003225s00041286 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25360.2 | 2.00E-33 | |
| NR | XP_003604393.1 | 7.19E-81 | hypothetical protein MTR_4g010330 [Medicago truncatula] |
| trEMBL | tr|G7JGZ6|G7JGZ6_MEDTR | 3.00E-81 | DUF4050 family protein {ECO:0000313|EMBL:AES86590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03225 | 15704 | 20156 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003225s00041286.1 | PF13259.1 | DUF4050 | 110 | 183 | 1.90E-10 |
| Glyur003225s00041286.2 | PF13259.1 | DUF4050 | 93 | 166 | 1.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.708 |
| SRR1783600 | control | 41.608 |
| SRR1783602 | moderate drought stress | 48.871 |
| SRR1811619 | moderate drought stress | 48.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 44.744 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 43.895 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 66.271 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 64.931 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.682 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.393 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.335 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 61.530 |
| SRR2868004 | Drought Stress (root) | 73.793 |
| SRR2967015 | Control (root) | 72.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 41.914 |
| SRR9715740 | Leaf | 43.829 |
| SRR9715741 | Leaf | 55.908 |
| SRR9715739 | Root | 18.577 |
| SRR9715742 | Root | 21.029 |
| SRR9715743 | Root | 21.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 54.448 |
| SRR8749028 | MeJA induced 9h | 105.727 |
| SRR8749029 | MeJA induced 9h | 95.637 |
| SRR8749030 | Uninduced | 177.492 |
| SRR8749031 | Uninduced | 306.395 |
| SRR8749032 | Uninduced | 176.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.703 |
| SRR8400027 | Control - Root | 50.939 |