Gene detail information of Glyur003225s00041284 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52560.1 | 2.00E-39 | HSP20-like chaperones superfamily protein |
| NR | XP_003604390.1 | 6.13E-99 | 26.5 kDa heat shock protein [Medicago truncatula] |
| COG | YP_004169012.1 | 5.00E-21 | heat shock protein hsp20 [Nitratifractor salsuginis DSM 16511] |
| Swissprot | tr|Q9SSQ8|HS26M_ARATH | 2.00E-75 | 26.5 kDa heat shock protein, mitochondrial (Precursor) |
| trEMBL | tr|G7JGZ4|G7JGZ4_MEDTR | 2.00E-99 | Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:AES86587.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03225 | 8901 | 10426 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003225s00041284.1 | PF00011.16 | HSP20 | 132 | 240 | 3.70E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.994 |
| SRR1783600 | control | 1.037 |
| SRR1783602 | moderate drought stress | 15.155 |
| SRR1811619 | moderate drought stress | 14.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.568 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.563 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 53.984 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 52.480 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.536 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.509 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.268 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.410 |
| SRR2868004 | Drought Stress (root) | 0.790 |
| SRR2967015 | Control (root) | 1.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.739 |
| SRR9715740 | Leaf | 8.835 |
| SRR9715741 | Leaf | 1.596 |
| SRR9715739 | Root | 1.483 |
| SRR9715742 | Root | 1.654 |
| SRR9715743 | Root | 2.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.105 |
| SRR8749028 | MeJA induced 9h | 2.790 |
| SRR8749029 | MeJA induced 9h | 1.866 |
| SRR8749030 | Uninduced | 2.173 |
| SRR8749031 | Uninduced | 7.513 |
| SRR8749032 | Uninduced | 6.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.532 |
| SRR8400027 | Control - Root | 1.470 |