Gene detail information of Glyur003223s00047455.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24660.1 | 5.00E-50 | homeobox protein 22 |
| NR | XP_004490406.1 | 9.62E-120 | PREDICTED: ZF-HD homeobox protein At4g24660-like [Cicer arietinum] |
| Swissprot | tr|Q9SB61|ZHD2_ARATH | 1.00E-71 | Zinc-finger homeodomain protein 2 |
| trEMBL | tr|G7KBF3|G7KBF3_MEDTR | 7.00E-120 | Homeobox domain, ZF-HD class protein {ECO:0000313|EMBL:AES98188.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03223 | 25039 | 25830 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | zf-HD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003223s00047455.1 | PF04770.7 | ZF-HD_dimer | 51 | 106 | 1.10E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.138 |
| SRR1811619 | moderate drought stress | 0.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.473 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.429 |
| SRR9715740 | Leaf | 0.708 |
| SRR9715741 | Leaf | 2.185 |
| SRR9715739 | Root | 0.125 |
| SRR9715742 | Root | 0.298 |
| SRR9715743 | Root | 0.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.349 |