Gene detail

Gene detail information of Glyur003222s00038187.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58730.1	2.00E-90	pfkB-like carbohydrate kinase family protein
NR	XP_004490595.1	0	PREDICTED: uncharacterized protein LOC101500912 [Cicer arietinum]
COG	YP_629034.1	2.00E-58	PfkB family kinase [Myxococcus xanthus DK 1622]
trEMBL	tr\|I1MBA8\|I1MBA8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G37260.1}

Sequence

Transcript Sequence

>Glyur003222s00038187.1
TTGGTGCCGTGAAGCCACTATAAATTGACACCTAAATCTGATTCTGGCGCGCGTCCTTTTTCCTCTCTCTTTCATACACCACATACATTGTACATAGTTTAAGATTAAGATCATAGAAACCTTCCTTCGCTTCTCTTGTTCTTCTTCTTATTCTTACTGCAGCATGGATTCTCACAACCGATAAAACCCAACCCCTTCCCTTCCAATCCATGACCCACAAAACGCCGTCGTCGTCATGGTCACAGACTCCAAACCCATTCCTCGCCGTGGCCTCGTCGTTGGCAACTACTGCCACGACGTCCTCCACCGTGACGGCNTCGTAGTCGCCGAGACCCTCGGCGGCGCCGCCTCGTTCATCTCCACCGTCCTCGACGCCCTCTCCCTTCCCTTCCACCTCGTCTCCAAGGTGGGCCCCGACTTCGCCCACGCCACCCTCACCTCAACCCACCCTCCTCTAGTGGTCCCCACCTCCCCAACAACCCTCTTCCACGCCCACTTCGGATCCGGCCACCCCGACCGGGTCTTAAAACGGGTCGGATCGTGTGATCCGATAACCCCCTCGGACCTCCCGTTCGGGACGAGGTTCGGGTTCGGAATGGCGGTTGGGGTTGGCGGGGAGATTCTCCCGGAGACGTTGGAGAGAATGGTGGATATCTGCGACGAAGTGTTCGTCGACGTTCAGGGTTTGATTCGGAGGTTCGACGACGCGGAGGGTGGGCGCGTGAGGCACGTGGGNTTGAAGGAGAGTGGGTTTCTTCATTTGTTGCCGCGGATTGGGTTTCTGAAGGCCTCTGCCGATGAGGCCTCCTTCGTTGATTTGGAGGAGGTGAGGCGGTGGTGTTGCGTGGTCGTCACGCACGGCAAGGATGGGTGCGAGGTGTTTTGTAAAGATGGGAGCTTTCGGGTCGACCCGTTTGGGGCACGTCAGGTGGANCCCACCGGCGCCGGGGACTGTTTTCTCGGCGGTTTCGCCGCCGGGATTGTGCAGGGCTTGGCTGTGCCCGATGCTGCCCTTTTGGGGAACTTCTTTGGTTCCTTGGCTGTGGCACAAGTGGGTCCACCCACGCTTGATTTGAGATTGTTTCAGGTGGTTAAGGATGAGATGCACAAAAGGAAGGTGCAGGACTTTCCCTTCTCAGAAAGCTCGGAAAAAAGAGATGAGTGGCCGGGGTTTCGGAAGCCANCTGATCAAGATCAATTCTATGCATCTCTTGTTGCTGCCAAGGACACAATTATGTGTCAGATTGAAGAATCTGGGTGGAATGTACTGAGCTCTCCTAAAGAGNTGGAGCAAAATAATGTGAAGGCAAAACTTACACTGAATTCTGTCCACGAGGAATCAATTCCAAGTGTTGGTAGTATACCATAATATCATGGGGTGGTTGTTGGAGCGCCAAATCTACCTGCAATTCTCCAGCACCCTTCCTTTTTGTTCAAATAATATTAGAAGGTCCTCNTCGCTTGAAGTAATCTTTCATTTTATGGTGTTTTTTGTGCACCAAGTCTCACGTGTAGCCTAATTGTAGTTATAGTTGTACTAAATTACTAATAAGATGTTCTTTAAAAAAATCAAGAAATTGAAATTCCATTCATCTCTGTATCCTTTGTCATCCTCTTGTACCCTTCTTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03222	15710	19281	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K19517	MIK	EC:2.7.1.64	Inositol phosphate metabolism	map00562

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003222s00038187.1	PF00294.19	PfkB	174	275	5.50E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.012
SRR1783600	control	11.210
SRR1783602	moderate drought stress	8.602
SRR1811619	moderate drought stress	8.214

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.992
DRR006520	Root Summer glycyrrhizin high producing strain	14.319
DRR006521	Root Winter glycyrrhizin high producing strain	18.856
DRR006522	Root Winter glycyrrhizin high producing strain	18.522
DRR006523	Root Summer glycyrrhizin low producing strain	21.459
DRR006524	Root Summer glycyrrhizin low producing strain	21.351
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.102
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.932

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.905
SRR2868004	Drought Stress (root)	14.908
SRR2967015	Control (root)	17.018

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.494
SRR9715740	Leaf	31.151
SRR9715741	Leaf	30.251
SRR9715739	Root	26.908
SRR9715742	Root	23.655
SRR9715743	Root	21.607

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.141
SRR8749028	MeJA induced 9h	17.055
SRR8749029	MeJA induced 9h	16.431
SRR8749030	Uninduced	20.436
SRR8749031	Uninduced	21.500
SRR8749032	Uninduced	30.593

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.585
SRR8400027	Control - Root	18.383