Gene detail information of Glyur003220s00037516 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49250.1 | 1.00E-55 | defective in meristem silencing 3 |
| NR | XP_004502653.1 | 1.66E-144 | PREDICTED: uncharacterized protein LOC101511352 [Cicer arietinum] |
| Swissprot | tr|Q94A79|DMS3_ARATH | 7.00E-73 | Protein DEFECTIVE IN MERISTEM SILENCING 3 |
| trEMBL | tr|I1JYR3|I1JYR3_SOYBN | 2.00E-127 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G41390.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03220 | 10455 | 13985 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.863 |
| SRR1783600 | control | 2.750 |
| SRR1783602 | moderate drought stress | 2.678 |
| SRR1811619 | moderate drought stress | 2.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.661 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.753 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.627 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.891 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.956 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.150 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.404 |
| SRR2868004 | Drought Stress (root) | 11.492 |
| SRR2967015 | Control (root) | 12.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.718 |
| SRR9715740 | Leaf | 8.074 |
| SRR9715741 | Leaf | 8.506 |
| SRR9715739 | Root | 1.298 |
| SRR9715742 | Root | 3.344 |
| SRR9715743 | Root | 3.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.835 |
| SRR8749028 | MeJA induced 9h | 13.543 |
| SRR8749029 | MeJA induced 9h | 6.821 |
| SRR8749030 | Uninduced | 4.657 |
| SRR8749031 | Uninduced | 4.189 |
| SRR8749032 | Uninduced | 1.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.131 |
| SRR8400027 | Control - Root | 9.027 |