Gene detail

Gene detail information of Glyur003211s00044411

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08290.1	8.00E-87	nodulin MtN21 /EamA-like transporter family protein
NR	XP_004500563.1	0	PREDICTED: WAT1-related protein At4g08290-like [Cicer arietinum]
Swissprot	tr\|Q9SUF1\|WTR31_ARATH	2.00E-119	WAT1-related protein At4g08290
trEMBL	tr\|I1KA88\|I1KA88_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G11780.1}

Sequence

Transcript Sequence

>Glyur003211s00044411.1
AGCAATTTCACTTGNTACGCACCCACCTTGCAGGGACCAAGAGAGAAAACAGATTCATTTCACGAGATGGGTGCGTGGTTGAGAAATGCAAAGCCATACCTGNTATTATTGGCCGTCCAATTTGGCTCTGCGGGAATGTTCATTTTCGCCATGGATGCTATCAGGAAAGGAATGAGCCATTACGTGTTCATCGTCTACCGTAATGCCATCGCCGCNATAACTCTCTCTCCCTTCGCATTTTTTCTAGAAAGGAAAGTTAGGCCCAAGATGAGTGTCCGTGTATTTTCAGAGATCATGGCACTGGCTTTCTTTGAAATAATACTTGATCAATGCTTNGCTCTCTTGGGGATGAAATTGACGTCCGCGTCGTTCTTGTCTGCTGTGATGAACTCCGCACCTTCGATTACTTTTCTGTTGGCGGTTATTCTAAAATTGGAGCACATGAAGATCAAGGAGGTAGCATGTCAAGCAAAAATGATCGGAACNGCAATAACATTCGGAGGAACATTGCTAATGGCACTGTACAAGGGTCCTGTAGTTAGTGTTGTGAGATCATCAAGCAGCCACGCTGGCCAGCCTGAGAATGTGAACGACCCCACAGGCAACCAGTGGGTCATAGGCACATGCTTCCTCCTCATTGGCTGCGCTGGCTTTTCTTCGTTTTACATATTGCAGGCCATAACATTGAGAAAGTACCCAGCAGAGATGTCACTGGCCACCTGGGTTTGCTTTATAGGCNCACTTCAAAGCTCAGTGGTCGCATATTTCGCGGAGCGCCACCACCCTCACGCCTGGTCTCTCGGTTGGGATACACGTCTCTTTGCCCCGGCTTATGCGGGGATAGTTACATCAGGAGTCCAGTATTACATACAAGGCATGGTCATAAAATCCATGGGCCCAGTTATTGTGACTGCTTTTAACCCCCTGCGTATGATCATCGTCACCGCCTTGGCTTGCATCGTCCTCTCTGAGCAACTCTTCCTTGGAAGTATTATTGGAGCAATAGTCGTGGTTCTTGGGCTTTATCTAGTTGTGTGGGGAAAATCGAAAGAATACAAGGGTGGAATCATGCCACCGTCACCTGTGAAGGAGAATTCCGTGCAAGATCAACAGCAGCTACCGGTCACAGCTCCTAGAAAAGAAAGTGGCGATAATAAAGCTCAATTGGTCATTCATGGTGATGAAAAAATCGACGAGGAGGCCACAATACCAAAAACAGAAGTTCAGCGAAATTAAATGGGGCTTAGCTTTGCTTAATTAGACATTGGTGTTACCAATCCCATACAAATAGTGACATGATCTAAAGGTCAATGTCATGCATTATATATATGTTACTCGTCACATGGAAATTGGCATGACGACGAATTTGTTATTTAATATAGTGGCCATGAGCATTGTTGTTGAATGTTATAATCGGGGATGTATCAAGTGAGAGGAGTTTTAATATGAGAGAGTGAGAGGATTAAATCTGGACCGTATAACCATACATGGATGGTTGGGATTAAAAGTTAGTTAATGGTCACATGACCACTTAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03211	12433	18141	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003211s00044411.1	PF00892.15	EamA	22	150	7.50E-09
Glyur003211s00044411.1	PF00892.15	EamA	197	323	2.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.156
SRR1783600	control	2.166
SRR1783602	moderate drought stress	2.086
SRR1811619	moderate drought stress	2.030

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.561
DRR006520	Root Summer glycyrrhizin high producing strain	18.017
DRR006521	Root Winter glycyrrhizin high producing strain	0.434
DRR006522	Root Winter glycyrrhizin high producing strain	0.353
DRR006523	Root Summer glycyrrhizin low producing strain	31.308
DRR006524	Root Summer glycyrrhizin low producing strain	32.308
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.210

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.438
SRR2868004	Drought Stress (root)	21.652
SRR2967015	Control (root)	24.603

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.022
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.060
SRR9715739	Root	1.776
SRR9715742	Root	7.698
SRR9715743	Root	5.820

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.326
SRR8749028	MeJA induced 9h	1.408
SRR8749029	MeJA induced 9h	0.275
SRR8749030	Uninduced	4.474
SRR8749031	Uninduced	0.347
SRR8749032	Uninduced	4.096

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.184
SRR8400027	Control - Root	0.986