Gene detail

Gene detail information of Glyur003210s00041946

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39890.2	8.00E-18	proline transporter 1
NR	XP_004503219.1	3.26E-130	PREDICTED: L-type lectin-domain containing receptor kinase VIII.2-like [Cicer arietinum]
COG	YP_003890765.1	7.00E-13	legume lectin beta domain-containing protein [Cyanothece sp. PCC 7822]
Swissprot	tr\|P92961\|PROT1_ARATH	1.00E-31	Proline transporter 1
trEMBL	tr\|G7JAM1\|G7JAM1_MEDTR	2.00E-126	Legume lectin beta domain protein {ECO:0000313\|EMBL:AES71085.1}

Sequence

Transcript Sequence

>Glyur003210s00041946.1
GCGGTGGAGGAAGCAGCTTAGCGTGGCGCTGCTAATTAGCAACAACAACTAGAAGAAGAACAATTTTATTATAGCCACCTCCGTTCCCAACAAAAAAGAATGGGGAAGGGAGGCGCTGCAGATAATAATCCAAACAAGGTCTACGACGATGGTGTTGGTGTTGAAGTCCCAGATACCGCACATCAGATTAGCAGCGATTCATGGTTTCAAGTGGCTTTCATCCTCACCACCGGAGTCAACAGCGCTTACGTGCTGGGATATTCAGGGACCGTCATGGTTCCCCTTGGTTGGGTCGGGGGTGTAGTTGGTCTAATTCTTGCCACCGTTGTATCACTCTACGCAAATGCTCTTAGATCTAGCTGGATATATATACGTTTCGACCCAAACATCGACCTCTTCGGCGATGCCCAGGTTGTCGCCTCCACCTCCGACAACGACCCCGGTGGGTCCCACGTGAGACTAACCCGCCATTCCCCCTTCACCGCTGGTCTCCTCCTCCGCCATGACCCTATCTCGTTTTCCGGCGACCCAACTTCTCTCTCCGTCGAGTTCTCCTTCTCCATCTCCCCCGACGCCGGCGACGGCCTCCTCCTCGTCCTCCTCCCCGGCGATCTCGCCNCCGTGTTCCCCGGTAACAGCTCCTTCGGCCTCTCCCCTCNGGCGAGCAGTTACCTCGGCGTTGAGTTCGACACCTCCAAGGACGACAATGTGAACGACCCCAACGCAAATCACGTCGGCATCGATGTCGGAAGCTTGATCTCCGTCGCTGTCGCCAATGTCTCCGCTTCGAATTTGGTTCTCAACAGTGGCGAAAAGTTTCAAGCTTGGGTCGATTACGTGGCGGGTTCTAAAACATTGGAAGTTAGGTTAAGCAAATTTGGTGAACCCAAATCTTCGAATCCCATCGTTTCGCATCCCATTGATCTGTTTCAGATTTGGGGTGCACAACCCGTGTTTGTGGGTATGAGCTCTTCGAATTACGCTNATTCGGTTCAGGTTGTGAGTGTTTATTCGTGGAGGCTTAGTTTGAGGAAGGTTTCGAAGTCGTTGCATTCTCAACCCGTTGATCCTAAAGGCGTTGTTGATGTGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGAAGGTTCCGTCCTTTGACACTTCTTGCTAGGGTGATTTTTGGGACCGTGTGTGTTGCATTGGTGACGTTTGTGGTGTTGTTCATGTGGGTGATCTTTTTCCAAAGGCAGGAAGAAGAGTCTCTTGTTAAAGTCCCTGATCACCCTGTTTCGGATGTCAGGTATGAGAGGATTGATGTGGCTGTTGACAAGAACAATGAAGAGGATGAAAATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03210	19725	22061	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003210s00041946.1	PF01490.13	Aa_trans	33	84	8.50E-07
Glyur003210s00041946.1	PF00139.14	Lectin_legB	88	308	3.70E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.567
SRR1783600	control	8.093
SRR1783602	moderate drought stress	5.448
SRR1811619	moderate drought stress	5.081

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.155
DRR006520	Root Summer glycyrrhizin high producing strain	13.194
DRR006521	Root Winter glycyrrhizin high producing strain	5.931
DRR006522	Root Winter glycyrrhizin high producing strain	4.968
DRR006523	Root Summer glycyrrhizin low producing strain	17.882
DRR006524	Root Summer glycyrrhizin low producing strain	17.712
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.572
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.594

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.787
SRR2868004	Drought Stress (root)	25.478
SRR2967015	Control (root)	26.828

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.991
SRR9715740	Leaf	1.404
SRR9715741	Leaf	3.718
SRR9715739	Root	10.747
SRR9715742	Root	10.384
SRR9715743	Root	9.141

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.151
SRR8749028	MeJA induced 9h	5.758
SRR8749029	MeJA induced 9h	3.719
SRR8749030	Uninduced	1.779
SRR8749031	Uninduced	0.533
SRR8749032	Uninduced	0.856

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.247
SRR8400027	Control - Root	24.275