Gene detail information of Glyur003210s00041945 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55740.1 | 3.00E-65 | proline transporter 2 |
| NR | XP_004503220.1 | 4.51E-103 | PREDICTED: proline transporter 1-like [Cicer arietinum] |
| Swissprot | tr|P92962|PROT2_ARATH | 1.00E-91 | Proline transporter 2 |
| trEMBL | tr|V7D2N9|V7D2N9_PHAVU | 2.00E-102 | Uncharacterized protein {ECO:0000313|EMBL:ESW35491.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03210 | 2514 | 6323 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003210s00041945.1 | PF01490.13 | Aa_trans | 1 | 167 | 9.50E-28 |
| Glyur003210s00041945.1 | PF01490.13 | Aa_trans | 192 | 299 | 2.60E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.739 |
| SRR1783600 | control | 13.432 |
| SRR1783602 | moderate drought stress | 8.080 |
| SRR1811619 | moderate drought stress | 8.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.022 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.339 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.019 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.905 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 76.394 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 78.706 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.188 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 95.269 |
| SRR2868004 | Drought Stress (root) | 84.284 |
| SRR2967015 | Control (root) | 106.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.255 |
| SRR9715740 | Leaf | 10.365 |
| SRR9715741 | Leaf | 30.455 |
| SRR9715739 | Root | 12.891 |
| SRR9715742 | Root | 32.050 |
| SRR9715743 | Root | 32.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.949 |
| SRR8749028 | MeJA induced 9h | 18.084 |
| SRR8749029 | MeJA induced 9h | 6.651 |
| SRR8749030 | Uninduced | 21.785 |
| SRR8749031 | Uninduced | 7.854 |
| SRR8749032 | Uninduced | 5.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.725 |
| SRR8400027 | Control - Root | 51.777 |