Gene detail information of Glyur003208s00043986 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48485.1 | 5.00E-15 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | AFK37599.1 | 1.62E-54 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8W453|DIRL1_ARATH | 5.00E-19 | Putative lipid-transfer protein DIR1 (Precursor) |
| trEMBL | tr|I3SBF7|I3SBF7_LOTJA | 6.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:AFK37599.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03208 | 11970 | 12284 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003208s00043986.1 | PF14368.1 | LTP_2 | 13 | 104 | 2.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 105.433 |
| SRR1783600 | control | 107.785 |
| SRR1783602 | moderate drought stress | 188.206 |
| SRR1811619 | moderate drought stress | 188.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 244.158 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 246.311 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.693 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.497 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 166.259 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 168.445 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.797 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 369.000 |
| SRR2868004 | Drought Stress (root) | 228.273 |
| SRR2967015 | Control (root) | 190.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.504 |
| SRR9715740 | Leaf | 4.324 |
| SRR9715741 | Leaf | 0.894 |
| SRR9715739 | Root | 60.109 |
| SRR9715742 | Root | 159.977 |
| SRR9715743 | Root | 126.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 516.606 |
| SRR8400027 | Control - Root | 548.142 |