Gene detail information of Glyur003202s00043107 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40670.1 | 5.00E-51 | PQ-loop repeat family protein / transmembrane family protein |
| NR | XP_004488939.1 | 2.07E-81 | PREDICTED: cystinosin homolog [Cicer arietinum] |
| Swissprot | tr|P57758|CTNS_ARATH | 2.00E-62 | Cystinosin homolog |
| trEMBL | tr|I1N7I7|I1N7I7_SOYBN | 9.00E-80 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G23610.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03202 | 8982 | 11848 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003202s00043107.1 | PF04193.9 | PQ-loop | 14 | 69 | 1.50E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.643 |
| SRR1783600 | control | 5.477 |
| SRR1783602 | moderate drought stress | 8.816 |
| SRR1811619 | moderate drought stress | 8.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.357 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.741 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.422 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.289 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.970 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.547 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.315 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.203 |
| SRR2868004 | Drought Stress (root) | 10.783 |
| SRR2967015 | Control (root) | 9.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.940 |
| SRR9715740 | Leaf | 4.880 |
| SRR9715741 | Leaf | 8.019 |
| SRR9715739 | Root | 1.544 |
| SRR9715742 | Root | 8.246 |
| SRR9715743 | Root | 5.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.174 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.061 |
| SRR8749031 | Uninduced | 0.103 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.646 |
| SRR8400027 | Control - Root | 12.956 |