Gene detail

Gene detail information of Glyur003201s00037960

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G33970.5	1.00E-100	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	KHM98843.1	0	Protein AIG1 [Glycine soja]
Swissprot	tr\|P54120\|AIG1_ARATH	4.00E-86	Protein AIG1
trEMBL	tr\|I1KW77\|I1KW77_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G25940.3}

Sequence

Transcript Sequence

>Glyur003201s00037960.1
TACGAGATGAGAAAAAAAATACCTGATTTCACACTCTATCTAGTTTCACTTTAAAAGCATACATATAGTTCGACTTGAGCTTGGTTTTCGTGTTGTTTGGGTTTTGTGTTACTGTTTACTTGTTTCTTGCGTCTGCGTTGCTTGGTTGGGAAAAAGCTTCTCCCTATTCTACAGTAACCTGAATTTATGATGGGGGGAAGTTACGTTGATGATGTTGATTCTGACTGGGAGCTTGCTTCCGAAGGATCTAATGAGGTTCGGACAGTCGTTTTGGTTGGACGTACCGGCAATGGCAAAAGCGCGACGGGAAATAGTATTCTTGGAAGAAAGGNCTTCAAGTCAAGGGCCAGCTCCTCTGCCGTAACCTCCTCCTGTGAATTGCAGACAACTGTGCTAAATGATGGACAAATTGTAAATGTCATTGATACTCCAGGGTTATTCGATTTTTCTGCTGGATCTGAGTTTGTTGGCAAAGAAATAGTCAAATGCATTGATTTGGCCAAGGATGGGATCCATGCCATCCTTGTAGTGTTCTCTGTTAGGACACGCTTTACCGAGGAAGAAGAAACTGCTCTACGTAGCTTGCAGACTTTATTCGGAAGCAAAATTGTAGACTACATGATCGTGGTCTTCACTGGAGGGGATGAGTTGGAAGANAACGATGAGACACTCGGCGATTATTTAGGCCGTGAATGTCCACAGCCTTTAAAGGAAATTCTTTCTCTGTGTAAGAATCGTTGTGTGCTTTTTGATAACAAGAGCAAGGATGAACTGAAGCGATATGATCAAGTTCAACAACTTCTCTCTTTTGTAAATATGGTTCTATCACAGAATGGTGGGCGGCCGTATACAGATGAGTTATTTACAGAACTGAAGGTGAAAGGAGCAATGAAGCTGCATAACCAACAAAGAGAGGTNGATTCCTTGGAAGGATATTCAAAAGGAGAGGTATCGGAGTTTAAAAAGCAAATGCAGCAAGCATATGAAGACCAGCTAAAACGAATTACTGAGATGGTTGAATCAAAGTTGAGGGAGGCAACTACAAGGCTTGAGCAACAACTGGCAGAAGAGCAAGCTGCAAGACTTAAAGCAGAAGAGGGTGCAAGGTTAGCTCAAATGAGATCAGATGTTGAAATACAAAAACTCAGAGAACATCTTGAAAAGGCGCATGAAGAACTCCGCAAGAATGCTGAAAGAGGAGGTTGTACCATTCTCTGATACTATATAACTATATATATACTTCAAACTTTCAAAGAAGTTTATTTAATTTTTCTCCTGGACCATGACATCTTGTTGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03201	22270	27123	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003201s00037960.1	PF04548.11	AIG1	25	240	9.30E-80
Glyur003201s00037960.2	PF04548.11	AIG1	25	240	9.30E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.468
SRR1783600	control	49.572
SRR1783602	moderate drought stress	53.076
SRR1811619	moderate drought stress	53.137

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	102.308
DRR006520	Root Summer glycyrrhizin high producing strain	100.613
DRR006521	Root Winter glycyrrhizin high producing strain	240.313
DRR006522	Root Winter glycyrrhizin high producing strain	233.453
DRR006523	Root Summer glycyrrhizin low producing strain	100.832
DRR006524	Root Summer glycyrrhizin low producing strain	100.858
DRR006525	Leaf Summer glycyrrhizin high producing strain	56.027
DRR006526	Leaf Summer glycyrrhizin high producing strain	55.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	78.622
SRR2868004	Drought Stress (root)	99.098
SRR2967015	Control (root)	101.743

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.485
SRR9715740	Leaf	73.397
SRR9715741	Leaf	71.369
SRR9715739	Root	7.762
SRR9715742	Root	30.980
SRR9715743	Root	25.120

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	161.637
SRR8749028	MeJA induced 9h	131.802
SRR8749029	MeJA induced 9h	196.584
SRR8749030	Uninduced	188.503
SRR8749031	Uninduced	293.322
SRR8749032	Uninduced	164.420

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	81.348
SRR8400027	Control - Root	79.467