Gene detail

Gene detail information of Glyur003200s00043479

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48770.1	7.00E-13	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_007141429.1	8.47E-28	hypothetical protein PHAVU_008G194900g, partial [Phaseolus vulgaris]
Swissprot	tr\|Q40392\|TMVRN_NICGU	1.00E-11	TMV resistance protein N
trEMBL	tr\|V7B984\|V7B984_PHAVU	3.00E-28	Uncharacterized protein {ECO:0000313\|EMBL:ESW13423.1} (Fragment)

Sequence

Transcript Sequence

>Glyur003200s00043479.1
ATGGATATTATTATCTCTGAGTTTGAAATCGATCACATTGAAGCAATTGTTGAGAAGATCAAAGCTAACATTGCTCCAAGACCTTTACATGTTGGTGAGGACCCGGTTGGACTTGAGTACTGCACAGAAGAGGTTAGGTCACTTCTAGACATGAAACCTAATGACAACACCGTATGCATGTTGGGCATATATGGACTTGGTGGAATAGGGAAAACAGAACTTGCCAAAGCATTATATAACAAGATTGCGCACCAATTTGATGCTGCAAGTTTTCTTGCCAACAATGCCTTTGGAAAGAGCAATCCTGAAACAGGTTATGAAGATATGTGTTCTCGTGCAGTGGGTTATGCCAAGGCAGGAAGTTTAGAAGATTGGGAAGATATATTGAAAGAATATGAGAGGAGTCCACATGAAAAGGTTCTGGATGTTCTAAAAATAAGCTACAATAGATTGGGGCCCAATGTCAGGACTACTTTCCTAGACATAGCTTGCTTCTTCAAAGGGGAGAGACTAGAATATGTTAAGAAGATACTTGAGGAATTTCGTGCAACGGAAGTGATGCAATTCAAGGGATAATGCTCNATCCTCCCCAACGTAAAGAAGTAGATTGGAGTAATATTGCCTTTAAGAAGATGAAATGCCTTAGAATTCTCATTGTTCGAGATACATNCTTTACATCAGAGCCAACACATCTGCCAAATTATTTAAGGCTNCTTGATTGGGTGGAGTACCCTTCGAAGTCTTTCCCTCCAAAATTTCATCCGAGGAATATCATNATCTTCAATTTGACTAAAAGCCAACTTACACTGGAAGAGCCATTTAAGAAATATTCATGCCTGACTATCATGAATTTCTCACATAATCAATCTATCACTGCAATGCCTGATGTGTCCGAAGTTAAAAGTTTGAGAGANCTGAGACTTGATAGTTGNAAGAACCTAATTGCAGTTCATGAATCCATTGGATTTCTGGAACATCTTGCCCACTTNAGTGCTTCAGGATGCACNAAACTTAGAAATTTCCTAAAAAGAATGTCTTTACCATCTCTGGAAGTCCTTGACCTTAATTTTTGTGTAAAACTTGAACACTTCCCAGAGATAGTGAACAACATGAATAAGTCATTGAAGATTTTTATGATAAAAACCGCTATTGAGGAGCTTCCAGATTCCATTGGGTATCTTACTGGGCTTGTTTCTATAGAGATGCAAAGTTGCTGGAAACTCAAATATCTACCAAGTAGCTTATTCAAGTTACCAAAAGTTGTTGCCTTGAAAATTGAAGGATGTTCTCAACTTCGAGAATCCTTCAGAAGGTTTCTACATGATGTCCCTTCAGCAGCCAATGGTCGTTCAATATTAAAATCATTGTATTTGGGAAAAAGTGGTTTGCAAGATGGAGATCTTCAGGCAGTTGTCATTTATTTTCCAAAATTAGAAGAGTTGATTGCATCAGAGAACAATTTTGTTTCTCTCCCTGCGTGCATTAAAGATTCTGTTCACCTGACAAGTCTTGATGTGAGTGGTTGCCACGAGCTTCAAGACATTCCTAAATGCACTAACTTGAGAATTCTAAATGTCCATCATTGCGTGAANCTTGAACACATTTCAGAGTTGCCCTCTACTGTTCAAAAAGTAGATGCAAGATACTGCTTCTCCTTAAGTAGAGAGACGTCAGACATGTTATGGTATCAGGTGAAAAAAGAGAGATGNGGATTAGAAATTGTGATGCCTCAGACCATGATTCCAGAGTGGTATGACTACAGAGGTGAAGGAGGAAATCCGNGTTTCTGGGCTCGTGGGAAGTTCCCCATTGTTGCTTTCGCATTGGTGTTCACGGGTGTGAATAGAAGGACCAGACATTCTCGCCGGCAACTTGTTGAGCTTCAATTGGTTATCAACGGTCGATNTGCCCCTCNCAAAGGCTATTACAACTTCAGAGTTGAAGCAGATCATGTGNTAGTTTGTGATTTGCGACTCCTTTTCAGCAAAGAGGAGTGGCAGGGCCTTGATGCATTGCTNGTGCATGAGTGGAATCAAGTGCAGGTTTCATNTGAAGCCCCATACAGCATGAGGCTANGTTCTTGGGGAGTGTTTGTGTACAAACAAGGAACAACCAACATGGGAGAATGTGTCCAATTCATGTGTCCTGACCCAAAATACTCGGTTATGGCCAACATACCCNCAATAGTCCCTGCAATAGATGCTAAGTGGGAACAAAGGAAGATGGTAGAGGAGTTAGGTCTAGATAAATTGTTTGATGGGAAGTTGAGGGAATCCTTGGACTTCGAAGATCGAGATACCTTTGGTGCCTTAGCACGCATTGCAGGCACTACTGTAGATAAAGATTTTGTCCAAGAGCAACACTATGCTCTAATGAGAGGTTTGAAGAAGATATCGGAGGAGGCTCGGGATGTATTAGAAGGCAAACCGCTAGATGATGAAAACTCCACCCTGGCTTTTATTTTACGGACTATCAAGAAAGATCGTGATAAAGATGGGCCTACAAACTTTGACCATGAGGATGGAAATGGAATGAAACCTTCCATGAATAATTTAGTAGGAGAAGGAGAAGCTTCTTCAAGATCTGGCCATCAGGGCAANGATGCTCAGCAGCAAGAACCACCCACAGTTCAAATATTGGAATTGGATTGGACTAAAGTGAAGTTTCCAACCTCTGACAATCCTTTTTTCGAAGTATCCATGATGATGAAGCATGAAAATTGTGAGCCGGAGGCCGTGAGTGAACTCCACCGTATGTTGAAGGAGGTAAACAGAGCTCAGGGCAAGAAATTGATAGAGAAGTTCAAAAGTACTCAATCTGCTCAGTCTATTTCAAACAAGCGTCACAAANTTGATGCTTCTGCTTCTAGTAGTAGCATAGAGATGCTCACAGACATTGAAAAAGAAGGCTGTAGTAGAGTTGTTACAAGGGGTGAGAAGCTGGCTGATGCTTTGCAAGGAAGACTTAGAGAATTGCGGAGGCTCTACGATGCTGGAATAGAAGGCTTCCAGAACCCTGAAGAGATTCAAGATCTGATGAGTGCCATATCCATGAATGGACTGAGGGATGAAGTACTTGAAGAACAGGCGATGCTACTTGCCCACGGTAGAACAACAGCTACTGTGATTAAGGAGAATGAGGAACATGTTATTACTGATCAAAAGGATGTCACTGCTGACGCTGCTGCTCCTAATGAAAATCCTGATGAAACAATTGACGACCCTTGGGACCCTCCTAACCCCCTGGGTCAGAGCTTCTTGAGGAATTTGGTCACTTATTTCACAATAATTATGTTTATGACACTNTTGTTTTCTAATTTAATCACCCCATTTAGTCCTTTTCAGTACTAACAATTTTTTTAGTGTCTGTACACTGCATGGTAATAAACCATCGAACCAGGGATGTGATTGTGACAAGCAATAATAGGCACCAGTACTTCAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03200	4340	9759	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003200s00043479.1	PF00931.17	NB-ARC	48	93	8.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.125
SRR1783600	control	6.201
SRR1783602	moderate drought stress	9.077
SRR1811619	moderate drought stress	8.907

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.872
DRR006520	Root Summer glycyrrhizin high producing strain	6.909
DRR006521	Root Winter glycyrrhizin high producing strain	6.486
DRR006522	Root Winter glycyrrhizin high producing strain	6.333
DRR006523	Root Summer glycyrrhizin low producing strain	6.558
DRR006524	Root Summer glycyrrhizin low producing strain	6.430
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.233
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.227

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.202
SRR2868004	Drought Stress (root)	92.379
SRR2967015	Control (root)	71.996

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.044
SRR9715740	Leaf	6.555
SRR9715741	Leaf	4.889
SRR9715739	Root	0.879
SRR9715742	Root	4.500
SRR9715743	Root	3.643

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.239
SRR8749028	MeJA induced 9h	6.938
SRR8749029	MeJA induced 9h	7.954
SRR8749030	Uninduced	6.246
SRR8749031	Uninduced	3.819
SRR8749032	Uninduced	3.251

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.237
SRR8400027	Control - Root	17.378