Gene detail

Gene detail information of Glyur003197s00043829

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G40087.1	5.00E-16	Plant transposase (Ptta/En/Spm family)
NR	XP_004488338.1	1.31E-68	PREDICTED: uncharacterized protein LOC101502917 [Cicer arietinum]
trEMBL	tr\|B1B5X5\|B1B5X5_TOBAC	7.00E-38	6b-interacting protein 2 {ECO:0000313\|EMBL:BAG12304.1}

Sequence

Transcript Sequence

>Glyur003197s00043829.1
GTCGTGGATCATGAAGCCACGAAATTCGGTCGGATATGAGCAAGGGGTTAGGGGATTTATTGATTTTGCCTTTGAACATAGTTCAGTAAATGGCAAAACAATAATGTGCCCTTGTAAACGGTGTGGTTTCAAAAAATGGCAGACTAGGGATGTGGTGTATGATCACTTAATCTGTACGCCATTTCCAGTAGGATACACTTTTTGGTTGCATCACGGGGAGTCCAGAATGGTAGAAGGTGGTTATATCTCGCCTTGTAACGTAGTTCAAGACACTGCTCTTGTTGAAGATCCCATTCAGAACATGATCAATGACGCATTTGGAGTTGATAGGCACCATGCAAATGAAGTACCGATTGCATCAGATGCAGAGATTGACCATGAATAATAACTAGTTGGAATCAGAGTTTCAACCAATAGGAGATTCTGCTGCTTTATTAGCTGGTTTTTTGGGTGAAGTCGGAGGCAACTTCAATAACTTCCCCATCATGTATGAAAATTGGAAAAAAGTTCCTGAAAAGACAAAAGATAAAATTTATTGTGATAAAATACAGGACATATCTCTCAAGAATGCAGCCAATCGTGAAAAGTTAGTGATTCCACATACCCTTGGATCCAAGACGCTTGCAAGGAAGAGGAACGAGTTGGAATTGCGAGATAAAAGACAATATAGTAGAGGAGAAATGTATACAATTGCTCACAAAAATAAGGATGGGTCCTTTGTCAACGACGAGGCCAGGGAAAAAATTGAACAATTCNATAATGAAATTGAGGGGAGTTCTTCTGAGAATGAGGCTTTTGCAAAAGTTTTTGGAAAAGAGCATCCTGGTTATGTTCGAGGTATAGGACTTGGGGTAACCCCATCTCAAGTCATCGGATCTATTGCTATGAGATCTGGATCTTCCTCTAATGCAAAAATAGACAAAATGCAAGCTGAAACTGACACACTCAAGGCACAAGTTGCACAGGTTGACATTCTAAAGGAACAAATTGCTTTTCTTTTNCAGAATGCCAAGGGGAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03197	15008	17541	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003197s00043829.1	PF03004.9	Transposase_24	19	125	4.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.510
SRR1783600	control	0.177
SRR1783602	moderate drought stress	0.826
SRR1811619	moderate drought stress	0.639

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.606
DRR006520	Root Summer glycyrrhizin high producing strain	1.761
DRR006521	Root Winter glycyrrhizin high producing strain	1.511
DRR006522	Root Winter glycyrrhizin high producing strain	1.060
DRR006523	Root Summer glycyrrhizin low producing strain	0.965
DRR006524	Root Summer glycyrrhizin low producing strain	0.771
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.971
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.775

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.056
SRR2868004	Drought Stress (root)	0.842
SRR2967015	Control (root)	0.666

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.832
SRR9715740	Leaf	1.605
SRR9715741	Leaf	2.511
SRR9715739	Root	0.142
SRR9715742	Root	1.915
SRR9715743	Root	1.631

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.715
SRR8749028	MeJA induced 9h	2.940
SRR8749029	MeJA induced 9h	3.521
SRR8749030	Uninduced	0.619
SRR8749031	Uninduced	1.037
SRR8749032	Uninduced	2.193

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.106
SRR8400027	Control - Root	6.144