Gene detail

Gene detail information of Glyur003194s00044694

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45616.1	2.00E-137	receptor like protein 6
NR	XP_003617044.1	0	Receptor-like protein kinase [Medicago truncatula]
COG	YP_004775215.1	6.00E-39	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	1.00E-108	Receptor-like protein 12 (Precursor)
trEMBL	tr\|G7KHF1\|G7KHF1_MEDTR	0	Receptor-like protein {ECO:0000313\|EMBL:AET00003.1}

Sequence

Transcript Sequence

>Glyur003194s00044694.1
ATGTGGGACTTGGATGAGTACCTACTTTGTCACAACAGTTTGTCAGTCTGGGTTACAGAGCGGATCACACCCACGCTATGTTACGTTCTTCTTCGTTTCCGCAATAGGAGTGTGGAATTTTCCACAGGTGTATATCGTGTAGCTGTTCTCTGTTTGGGGGACTGGCACTCTTACAGTGGTAGTGTAAATCGGTTCATAGGTGTGCTTTTGAAGAGAGGACCACACCTTGTTCATCAACGTAAAGCTACAACCAGCAAAAGGATTCCAATTTGGCAATTTCTACGTTCCTATTACGAAAGTAACGGTTTTGATATTAACTCTCTTATTGTCAACACTTCATCAGCTGTGCCTATATTATCTGATGATGGTTCACCTCCTTGTCCCTCTCTTTCTTCAAAGATAGAATCTTGGAAAAACAATACAGACTGTTGTGAGTGGGATGGTGTCGCGTGCGACACCATGTCTGGGCATGTGATCGGTCTAAACCTTTGCTGCAGTCATCTCCAAGGGGAATTTCATCCCAACAGCACCATCTTTCAGCTCAGGCAACTTCAACAGCTCAACCTCGCTTTCAATGATTTTTCCGGGTCTTCAATACCACCTGGAATTGGTGATCTCGTGAATCTCACACATCTTAATTTATCACGCTCTGCAATTGGTGGTGATATTCCTTCCTCAATCTCTCACTTGTCAAAATTAGTATCCCTTGATCTCAGCACTGACTGGATAGCTACTGATCTTAGTGACTTGGGAATGAGACTTGATCCATTCACATGGAAGAAACTCATTCTTAACGCTACTAATTTAAGGAAGCTTCATCTAGATTGGGTGGACATGTCTTCCATCAAAGAGAACTCTTTCTCATTGCTACTGAATTTGTCATCCTCTTTGGTCTCTCTTAGTCTTGCATACACTGGTTTGCAAGGATACATGCCAAGTGAAATCCTCTCTTTACCTAATCTTCAAGAGCTAGACTTGTCAAGCAATCTAAACCTTGGTGGTCAACTTCCAAAGTCCAACTGGAGCACATCTCTAAGGTATTTGGATCTCTCTAGCATTGCTTTCTCAGGAGAAATTCCAAACTCCGTTGGCCATTTTAAATCTCTCAACCATTTATCTCTTACGGCATGCAAATTTCATGGATTGGTTCCTCCGTCACTCTGGAACCTCACTCACCTGACACATTTGAACCTCAATTTCAACAACCTTAACGGTGAGATCCCATCATTAATTTCAAACCTCAAACATCTCACTTATTGTGGTCTTCAATTTAATAACTTTAGTGGTCACGTCCCAGATGTGTTTGGCAAGTTAACCAAATTGAAACTCCTATCACTTTCCTCTAACAACCTAGGAGGCCAAGTTCCACCATCTTTGTTTCGTCTAACTCAACTTTCTGGTTTATATTTATCGCATAATAAATTAGTAGGACCAATCCCAACTGAAATTACTAAACACTCAAAATTGGATACTCTAGCTTTGGATTATAACATGCTAAATGGAACAATTCCACATTGGTGCCGTTCTCTGTCTTCGTTGTCAAAGTTGTACCTCAATGACAACCAGCTCATGGGGTCAATTGGTGAATTCTCAACTCATTCTTTGCAATATTTTTTTCTCTCGAATAATAAGCTACAAGGAGATTTTCCAAATTCAATATTTGAGTTCGAAAAGCTCACCTACTTAAGTTTGTCTTCAACGAACTTGACTGGTCTTGTGCATTTTCACCAATTTTCAAAGCTTAAAGATCTAATTTTCCTCGACCTGTCGCACAATAGTTTTCTCTCTATTGACATTGATAGCAGTGCTGACTACATCTTACCCAACCTTGAAACCTTACATTTATCTTCCAGTAATATTTATAGTTTCCCAAAGTTCTTAGCACGTCTTCAAAATCTGCGAGTATTAGATCTTTCTTATAACAAAATTCATGGGAATGTTCCAAAATGGTTTCATGAGAAGCTCTTGCACTCGTGGAAGTCCATTCAACATATCGATCTCAGTTTTAACAAGTTCCAAGGAGATCTTCCAATTCCACCCGATGGCATTCAATACTTTTTAGTCTCAAACAACAACTTCACAGGAGACATTTCTTCAACATTGTGCAATGCAAGTTCCCTCACAACGCTCGACTTGGCTCACAACAACTTGACAGGCACGATTCCACATTGCCTAGGCACATTTTCTTCACTTTGGGTGTTGGATTTGCAAATGAATAACCTTTATGGAAGCATGCCTAGAAGCTTTTCTGAGGGAAATGCATTTGTGACTATAAAGTTGAATGGCAACCGATTGGAAGGACCATTACCGCAGTCTTTGGCTAACTGCACAGGACTCGAGGTTTTGGACCTTGGAGACAATAACATAGAGGATACGTTTCCCAATTGGTTGGAAACTCTACAAGAGTTGCAGGTACTGAGTTTACGATCAAATAAACTTCATGGTGAAATCAACTGTTTCAGCACTAGGCATCCATTTCCCAAGTTGAGAATTTTTGATGTCTCCAATAACAATTTCAGTGGCCCCTTGCCAACATCATGCATCAAAAACTTTCAAGGAATGGTGAACGTGAGTGATAGCCAAATTGGTTTGCAATACATGGGTCATGAATTATACTACAATGATTCTGTGGTGGTCATAATGAAAGGTCTATATGTGGAGCTAACGAGAATACTAACTACTTTCACAACTATTGATTTTTCCAAGAACATGTTTGAAGGAGAAATTCCGCAAGTCATTGGAGAATTAAATTCTCTCAAAGGCCTTAACCTTTCACACAATGGAATCACAGGTACCATTCCACAATCCTTGAGTAATCTGAAAAATCTGGAATGGTTGGACCTCTCATGGAACCACTTGACAGGTGAAGTTCCTGTGGCTTTGACAAATTTGAATTTTCTCTCTTTCTTGAACCTCTCACAGAACCAGTTGGAGGGAATCATACCTATAGGTAAACAGTTTAATACATTTGGAAATGATTCCTTTGATGGAAATCCAATGTTGTGTGGATTCCCTTTGTCAATATCATGCAGTAAAGGTGAAGAAAAACCACCACATTCAACAAATCACCATCAAGAGGAATCAGGATTTGGCTGGAAATCCGTGGTAGTGGGATATGCATGTGGGGCAGTATTTGGGATGCTCTTGGGATATAATGTATTTTGGAATGGGAAACCTCGATGGCTTGCAAGACTTGTTGAAAGGATGTTTAACATAAGAGTGACGAAGACAAACAATAGAGGCCGTGCAAATCGTAGAGGAATGAATTAG

Protein Sequence

>Glyur003194s00044694.1
MWDLDEYLLCHNSLSVWVTERITPTLCYVLLRFRNRSVEFSTGVYRVAVLCLGDWHSYSGSVNRFIGVLLKRGPHLVHQRKATTSKRIPIWQFLRSYYESNGFDINSLIVNTSSAVPILSDDGSPPCPSLSSKIESWKNNTDCCEWDGVACDTMSGHVIGLNLCCSHLQGEFHPNSTIFQLRQLQQLNLAFNDFSGSSIPPGIGDLVNLTHLNLSRSAIGGDIPSSISHLSKLVSLDLSTDWIATDLSDLGMRLDPFTWKKLILNATNLRKLHLDWVDMSSIKENSFSLLLNLSSSLVSLSLAYTGLQGYMPSEILSLPNLQELDLSSNLNLGGQLPKSNWSTSLRYLDLSSIAFSGEIPNSVGHFKSLNHLSLTACKFHGLVPPSLWNLTHLTHLNLNFNNLNGEIPSLISNLKHLTYCGLQFNNFSGHVPDVFGKLTKLKLLSLSSNNLGGQVPPSLFRLTQLSGLYLSHNKLVGPIPTEITKHSKLDTLALDYNMLNGTIPHWCRSLSSLSKLYLNDNQLMGSIGEFSTHSLQYFFLSNNKLQGDFPNSIFEFEKLTYLSLSSTNLTGLVHFHQFSKLKDLIFLDLSHNSFLSIDIDSSADYILPNLETLHLSSSNIYSFPKFLARLQNLRVLDLSYNKIHGNVPKWFHEKLLHSWKSIQHIDLSFNKFQGDLPIPPDGIQYFLVSNNNFTGDISSTLCNASSLTTLDLAHNNLTGTIPHCLGTFSSLWVLDLQMNNLYGSMPRSFSEGNAFVTIKLNGNRLEGPLPQSLANCTGLEVLDLGDNNIEDTFPNWLETLQELQVLSLRSNKLHGEINCFSTRHPFPKLRIFDVSNNNFSGPLPTSCIKNFQGMVNVSDSQIGLQYMGHELYYNDSVVVIMKGLYVELTRILTTFTTIDFSKNMFEGEIPQVIGELNSLKGLNLSHNGITGTIPQSLSNLKNLEWLDLSWNHLTGEVPVALTNLNFLSFLNLSQNQLEGIIPIGKQFNTFGNDSFDGNPMLCGFPLSISCSKGEEKPPHSTNHHQEESGFGWKSVVVGYACGAVFGMLLGYNVFWNGKPRWLARLVERMFNIRVTKTNNRGRANRRGMN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03194	5230	9837	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003194s00044694.1	PF08263.7	LRRNT_2	128	152	3.80E-05
Glyur003194s00044694.1	PF13516.1	LRR_6	208	228	0.097
Glyur003194s00044694.1	PF00560.28	LRR_1	320	339	0.16
Glyur003194s00044694.1	PF13855.1	LRR_8	343	403	1.90E-06
Glyur003194s00044694.1	PF13855.1	LRR_8	418	475	8.20E-07
Glyur003194s00044694.1	PF00560.28	LRR_1	534	555	0.52
Glyur003194s00044694.1	PF13855.1	LRR_8	608	671	3.80E-08
Glyur003194s00044694.1	PF00560.28	LRR_1	706	724	0.1
Glyur003194s00044694.1	PF13855.1	LRR_8	757	813	8.00E-09
Glyur003194s00044694.1	PF00560.28	LRR_1	828	850	0.8
Glyur003194s00044694.1	PF13855.1	LRR_8	897	953	1.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.463
SRR1783600	control	1.539
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.173
DRR006520	Root Summer glycyrrhizin high producing strain	7.172
DRR006521	Root Winter glycyrrhizin high producing strain	2.525
DRR006522	Root Winter glycyrrhizin high producing strain	2.462
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.078
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.988

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.909
SRR2868004	Drought Stress (root)	2.563
SRR2967015	Control (root)	1.944

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.162
SRR9715740	Leaf	0.029
SRR9715741	Leaf	3.326
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.321
SRR8749028	MeJA induced 9h	1.131
SRR8749029	MeJA induced 9h	0.186
SRR8749030	Uninduced	1.345
SRR8749031	Uninduced	0.214
SRR8749032	Uninduced	0.031

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.136
SRR8400027	Control - Root	2.884