Gene detail

Gene detail information of Glyur003192s00037961.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53620.1	1.00E-109	pyrophosphorylase 4
NR	KEH42358.1	1.47E-163	soluble inorganic pyrophosphatase [Medicago truncatula]
COG	YP_679690.1	1.00E-68	inorganic pyrophosphatase [Cytophaga hutchinsonii ATCC 33406]
Swissprot	tr\|O48556\|IPYR_MAIZE	2.00E-124	Soluble inorganic pyrophosphatase
trEMBL	tr\|A0A072VLU8\|A0A072VLU8_MEDTR	5.00E-164	Soluble inorganic pyrophosphatase {ECO:0000313\|EMBL:KEH42358.1}

Sequence

Transcript Sequence

>Glyur003192s00037961.1
GTAAGAATTTTCTTCGATTCTTTAGACTCATGCTTTTTTTTTTTTCCCCTTTAATATTATTATTACCCGCAACCCCTCCCCACCCCGAAAACAGCAAACAGAGCGGGAACGCGTCGCGTACACCTCACATTTTCCCAATTCCCACCTCTNTACATAAAGCGTTCCCTTCTCGTTGCTCTTTGCAGTCACAACAAGCAAACATTCACTCCTTTCAGTCCTCTCACACTTTCTCTTCTCATCCTCTTGTGCCCATTTTCTTCTCTATAGTTAGATCTGTTCACTGCGCTTCTTCTCGAAGCCTCTTTTCCTTCGCTTCCTTGTTAATCAATCGTCGGCGTTTCGCTTGTAACGCAAAAATGGCTTCTGAATCGGAAAATGTCAAAGGGGTTATTACTGAGGTGCCAACCACAGTGACTGAAATCGCGATGAATCTCAATTTTGCTGCAGACATGTCTCCACCCATTGAGACCCCAACCAAGGTTCCAACCAACAATCATTCCTCACATCCACCTCTGAATGAGAGGATTCTTTCCTCATTGACCAGGAGATCTGTTGCCGCACACCCTTGGCATGATCTTGAGATAGGACCTGAAGCTCCAAAGATCTTTAACTGTGTGGTTGAAATTGGGAAAGGAAACAAGGTGAAATATGAACTGGACAAAAAAACTGGACTTATTAAGGTTGACCGTGTACTTTACTCATCAGTTGTGTATCCTCACAACTATGGGTTTGTCCCCCGAACTATCTGTGAGGATGGTGACCCCATAGATGTCTTGGTCATTATGCAGGAGCCGGTTCTTCCTGGTTGCTTTCTTCGGGCCAAAGCAATTGGGCTCATGCCCATGATTGATCAGGGTGAGAAAGATGACAAGATTATTGCTGTCTGTGCTGATGATCCCGAGTATAGGCATTACAATGATATCAAGGAACTTCCTCCACATCGTTTAGCTGAAATCCGTCGTTTTTTTGAAGACTACAAGAAGAATGAGAACAAGGAGGTTGCAGTAAACGACTTTCTTCCTGCCTCAACTGCCTTTGAAGCGATCGAACATTCAATGGCTTTGTATGCGGATTACATCGTGGAGAGCTTGAGGCGGTAGTGTTGACACATGGGATTCTGTTTGGTCGTGAAGATATGTTTCAAAAGGTTGCAATATAACTATGATACGATGACTATGACGAAAAAAGGATTTTATCCTATAGCATGTACATTTGTCTAAGAACTGACAACACATGCATATTCTACTCATTGTGCTTAATTTTGAATGTCTTGTGATATTTTCATTTATTAATATACATATCCGTTTTATGGTATTCTCATCGTACTTATCTCGTACAATGCGTAAATAATATATGCTGTAAGTTAACATTTGACTGCGCTAGACGCAACTTGATTCCTTCTTCCCACCCAAACTTGANGTCTGATAAATTTGCAAAGAGCAATGTGTAGAAATCAGAATCATCATTACTTCAAAAATGATGATGTTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03192	4887	9363	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01507	ppa	EC:3.6.1.1	Oxidative phosphorylation	map00190

Gene Ontology

biological_process
GO:0006796 phosphate-containing compound metabolic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000287 magnesium ion binding

GO:0004427 inorganic diphosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003192s00037961.1	PF00719.14	Pyrophosphatase	194	347	4.50E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	120.001
SRR1783600	control	120.118
SRR1783602	moderate drought stress	60.933
SRR1811619	moderate drought stress	60.709

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	186.082
DRR006520	Root Summer glycyrrhizin high producing strain	186.206
DRR006521	Root Winter glycyrrhizin high producing strain	235.220
DRR006522	Root Winter glycyrrhizin high producing strain	229.391
DRR006523	Root Summer glycyrrhizin low producing strain	372.530
DRR006524	Root Summer glycyrrhizin low producing strain	372.473
DRR006525	Leaf Summer glycyrrhizin high producing strain	118.960
DRR006526	Leaf Summer glycyrrhizin high producing strain	118.374

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	149.406
SRR2868004	Drought Stress (root)	129.083
SRR2967015	Control (root)	139.788

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	91.673
SRR9715740	Leaf	92.349
SRR9715741	Leaf	89.690
SRR9715739	Root	100.774
SRR9715742	Root	128.079
SRR9715743	Root	120.712

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	262.600
SRR8749028	MeJA induced 9h	200.205
SRR8749029	MeJA induced 9h	237.032
SRR8749030	Uninduced	244.504
SRR8749031	Uninduced	117.995
SRR8749032	Uninduced	85.692

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	145.629
SRR8400027	Control - Root	206.920