Gene detail information of Glyur003189s00045040 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G63680.1 | 4.00E-07 | acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases |
| NR | XP_004503706.1 | 1.47E-20 | PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase-like [Cicer arietinum] |
| trEMBL | tr|A0A072U5D4|A0A072U5D4_MEDTR | 6.00E-17 | UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000313|EMBL:KEH21070.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03189 | 26871 | 27409 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.982 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.653 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.590 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.384 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.725 |
| SRR2868004 | Drought Stress (root) | 0.356 |
| SRR2967015 | Control (root) | 0.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.990 |
| SRR8749028 | MeJA induced 9h | 3.398 |
| SRR8749029 | MeJA induced 9h | 6.976 |
| SRR8749030 | Uninduced | 0.628 |
| SRR8749031 | Uninduced | 0.694 |
| SRR8749032 | Uninduced | 3.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.030 |
| SRR8400027 | Control - Root | 0.000 |