Gene detail

Gene detail information of Glyur003183s00044606

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G13450.1	2.00E-14
NR	KHG23517.1	1.61E-52	Kinesin-4 -like protein [Gossypium arboreum]
Swissprot	tr\|O04244\|Y4200_ARATH	1.00E-10	Uncharacterized protein At4g02000
trEMBL	tr\|M5VIG0\|M5VIG0_PRUPE	3.00E-32	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00536.1} (Fragment)

Sequence

Transcript Sequence

>Glyur003183s00044606.1
ATGGAAGGACTTAGGGACAACATGCNCGAGGGGGATTTGGATGCTGCAGTAGTGTATTTAGAGGCAAATGAAGAGGAAAGTTTGCATCTTGCTAAGAGATCTTTAGCTGGAAAGATCATCACCAGTAAGCCCCTGAATAGGGGTGNTGTTAAGGCTATACTTCATACTGCTTGGGGCGAACCTACTGGGTTGCAGATTGCTGATATGGGTATCAACACATACCTCTTCACCTTCTCTACTGTCCAAGAGGCGAAGGATGTGCTACAAAGAAGCCCATGGTTTGTAATGAATCACCTTCTCAGCCTGCAAAGATGGATTCCAAAAGCCTCTATTTATGAAATCAACTTTGATATAGTGCCTTTTTGGGTTCAAATGCATGGCTTGCCTCTAGAATTTATGAATGTAAAAAATGCAGTGACTTTAGCCAACCGAATTGGGGAAATTATTGAAGTGGAAGACCCCCTTGTTAATGGAAATCTTCTCAGGACCTTCTTCAGGGTTAGAGTTGGTATTAATGTTAAAAAGGCTATTCCGACAGCCTGCTGGGTACCACGCAAAGATCTCCCCAATGCTTGGGTTGTCTTTAGATATGAAAGAATGCAGGACTTGTGTTACAACTGTGGGATTTTGGGGCATGATCAAAGAAGCTGCAAGAAGGAGAAGGTTATNGCAACACATGACCAAAGTGTACCTAGGTACGGGCCCAGTCTAGGCGTCCCTCCAGCTAGACCGTTGGCCATTATTGCAGCGAAGCAAGGCCGGTGGGCTCCCACTAGCCAACATACATCACCAAAAGCAGACAAAGTGGCACCGGCTGCAGGAAACAGGGAGGGTGATCAAGCTGGCGCTGATCGAGATAATGCACAACAACCAAGAAATTGCATGCTTACAGGGGANGGGTCCTCCACACTTCACAATTTGCATTTGGCGGGATGGGGCTCACAGGTTATGACAGAACAGCNGAGAGACTACAACAGTATACCCACCTCCCAGGGCCCCATTAATGAAAAAAGAGATCAGTGGTTTGAGGTAACAGGGATCACTATCTCCGAACCATCAAGTAAGGATGNAAGGGAGACCATGGAAGCTCAGCAGGGGACATCTCGGACAATCAATCGAACAGTTAATGTTGTTTACAAGCCTGATGGGAACAAAGGCTTAGTTTCTGAGGCTGGCTTTAACAGGTACAAGCACAATTCAGACAACTTGNATCAAGAGCAGGGACAAGAAATTTTGCAACCTCAAGAGGTTCAACCGAACTCCTATGCTGAGCCTTTTGAACCTCTGGGCCTGGTACAGTTGCATCCGGATAGGCCATCGGATGGCCACCTACACCCTAAACATTCTAATGCTCAAGCTACCTCAGCGTCTCCTCCTCTATGCCCACGAACGGCCAGGCCAGCTTCCAAAAATAAAGTAGGGTTTCCCTCGGATGAAGAGGGGGAACAGTACCAACAGAGGATACAAGAGGATGAGGAAAAGGAACTAGCACAAAACATGCAGCTGGTGCTTTCTCTGAAAAGGCCAAGAGAGGAAGAAGATGAGGATTGGCAGCTCAAGCGTCAGCAGTACCTTCTTAGGGATGATGGCTTTCCTCTGGAAGGCAAAAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03183	7983	9833	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003183s00044606.1	PF14111.1	DUF4283	23	169	9.90E-31
Glyur003183s00044606.1	PF14392.1	zf-CCHC_4	171	219	8.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.675
SRR1783600	control	1.723
SRR1783602	moderate drought stress	1.517
SRR1811619	moderate drought stress	1.687

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.150
DRR006520	Root Summer glycyrrhizin high producing strain	1.023
DRR006521	Root Winter glycyrrhizin high producing strain	0.207
DRR006522	Root Winter glycyrrhizin high producing strain	0.201
DRR006523	Root Summer glycyrrhizin low producing strain	0.068
DRR006524	Root Summer glycyrrhizin low producing strain	0.068
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.755
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.842

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.658
SRR2868004	Drought Stress (root)	1.312
SRR2967015	Control (root)	0.190

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.474
SRR9715740	Leaf	0.111
SRR9715741	Leaf	0.526
SRR9715739	Root	0.377
SRR9715742	Root	2.787
SRR9715743	Root	2.047

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.336
SRR8400027	Control - Root	9.069