Gene detail

Gene detail information of Glyur003169s00037739.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10390.1	0	Flavin containing amine oxidoreductase family protein
NR	XP_004504519.1	0	PREDICTED: lysine-specific histone demethylase 1 homolog 3-like isoform X1 [Cicer arietinum]
COG	YP_001544095.1	2.00E-64	amine oxidase [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|Q9CAE3\|FLD_ARATH	0	Protein FLOWERING LOCUS D
trEMBL	tr\|V7BKH0\|V7BKH0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17528.1}

Sequence

Transcript Sequence

>Glyur003169s00037739.1
ATGGATCCCCCACCTCAATTTCCTTTCTCTCCTCCTTCCCAGTTAGCTCCTCAACAAAACCCCAACCCCAACCCCATTCCTATCTCCGATTCAACCCCAAATTGGGTCCAAAACCCTAACCCTAACCCCAACCCCAACCCAAGCTTGAGCCACTACCTCTCTCTCTCCGTCCCCAAAAAGAGGAGGCGCGGCAGGTCCCAACGCAACCCGGCGTCGTTTCGCGCCCCTCTCATCCTCAATGGCTCTCTCAATGCCAACAACAACAACAACAACGACCTCGCCTCTTACGCCATCTCTTCAATCAGAAACCCGTCGTCGTCATCAACGCAATCTTCTTCCGCACCCGATATCTCCGATGAGATCATCGTGATCAACAAGGAGCCCAAAACAGAGGCGATGATTGCACTTTCCGCGGGTTTTCCGGCGGATTCGCTGACCGAGGAGGAGATCGAAGCCGGAGTCCTTCCCGTCATCGGAGGGATCGAACAGGTGAATTACACTCTCATTAGGAACCACATTATTGCTAAATGGCGTGAGAATGTGACTAATTGGGTTACTAAGAAAGTGTTCACCGATTATATACCTCAGCATTACCACACGCTTTTGGACTCTGCTTACAATTTTTTGGTATCACACGGTTATATCAATTTCGGTGTTGCTTCCTCAATGAAGGATAAAATCCCTGCTGAACCGAGTAAGCCCGGTGTGATTATTATTGGCGCCGGACTTGCCGGGTTGGCTGCCGCACGGCAGCTGATGCGGTTCGGGTTTAAAGTGACTGTGTTGGAAGGTAGGAAACGGGCTGGCGGACGGGTTTATACGAAGAAAATGGAGAGTGGGAATAGGGTGTCTGCGGCTGCTGATTTAGGTGGGAGTGTTTTGACCGGCACCTTGGGGAACCCTCTTGGGATTGTGGCTAGGCAGTTAGGTGATCTGCTTCATAAGGTGAGAGATAAGTGTCCGCTTTATAGCGTGGATGGAAAGCCGGTTGACCCTGATATGGATGTGAAGGTGGAGTCTGCTTTTAACCGTTTGTTGGATAAGGCAAGCAGGCTTAGACAGTCGATGGGGGAGGTCTCTGTCGATGTGTCCCTTGGCGCGGCACTGGAAACATTCAGGCAGGTATATAAGGACGCTGTGAATGATGAGGAGATGAAGTTGTTCAATTGGCATCTTGCAAATTTGGAATATGCAAATGCGGGTTTGTTGTCGCATCTTTCACTTGCGTTTTGGGACCAAGATGATCCGTATGATATGGGAGGAGATCATTGCTTTTTGCCTGGAGGAAACGGAAAGCTGGTTCAAGCCTTGGCTGAGAACGTGCATATTTTGTATGAGAAAACTGTACATACGATTAGGTATGGTAGTGCCGGAGTGCAGGTTCTTGCAGGGAGTCAGGTATTTGAGGGTGATATGGCATTGTGCACTGTTCCCCTAGGTGTGTTAAAGAAAGGGTCTATCAAATTTATACCAGAGTTGCCTCAAAGAAAGCTTGACGGAATTAAAAGATTGGGTTTTGGTCTACTGAATAAGGTTGCTATGCTTTTTCCTCATGTGTTCTGGGAGATGGATCTTGACACGTTCGGGCATCTTTCTGATGATCCAAATCGTCGTGGGGAATTCTTTTTGTTTTACAGTTATGCAACAGTTGCTGGTGGTCCCCTGTTGATTGCATTAGTAGCAGGGGAAGCTGCACATAAATTTGAGAGCATGCCCCCTACAGATGCAGTCACACGGGTTCTTCAAATTCTCAAGGGTATCTATGAACCAAAAGGAATCAACGTTCCTGAACCTATCCAAACTGTCTGTACTAGGTGGGGTAGTGATCCCTTCTGCTTTGGTTCTTACTCTAATGTTGCAGTTGGAGCTTCAGGTGATGATTATGATATTTTAGCTGAAAGTGTGGGAGATGGTAGACTTTTCTTTGCTGGGGAGGCAACCACTAGGCGCTATCCTGCTACTATGCATGGGGCTTTTCTAAGTGGTCTAAGAGAAGCGGCAAATATGGCCCACCATGCTAATATTCGATCACTGAAGATGAAGGTTGAAAAGACCCCTTCAACTGCTCATTCTTGTGCTTCCCTTCTTGCAGATTTATTTAGAGAACCTGACATAGAATTTGGGAGTTTTTCTGTCATTTTTGCTGGGAAGAATGCAGACCCGAAGTCACCAGCAATCTTGAGGGTAACATTTAGTGAGCCTAAAAAGAAGTGTCATGAAGTTTCCAAACAAGATCAACAACAACACACAAACAAATTACTTTTTCAACAGCTTCAGTCACATTTTAATCAACAGCAGCTGCTTCATGTTTACACTTTACTGTCAAGACAACAGGTTCTTGACCTAAGAGAGGTAAGAGGTGGTGATGAAATGAGATTGAATTACCTTTGTGAAAAGCTAGGAGTGAAGCTGGTGGGAAGAAAAGGATTGGGGCTGAATGCTGATTCTGTCATTGCTTCCATTAAAGCTGAGAGGGGCAATCGTAAACCTGTTTCAACCTCTATGGCTCTTAAACCAGGGGTGTCAAAGCTAAAAGCGGGCATTATGAAGCGAAAGTTGATCAGAAAGGCAAAAGTGGTGAAGAAAAGTATTGGGTCCATACCTCGTGCAAGCACAAACATGGGGAGTGCCACTAAAGTACCAGAAGAGATTCGGATAATAGATCAAGCAATTCCTGATGTGCTTGTTTCAGGGAGCAATCAAAATGACTTGTCAAATTCACATCCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03169	23711	27503	-

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-SWI3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003169s00037739.1	PF04433.12	SWIRM	133	217	6.80E-15
Glyur003169s00037739.1	PF01593.19	Amino_oxidase	243	669	1.50E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.304
SRR1783600	control	6.468
SRR1783602	moderate drought stress	8.535
SRR1811619	moderate drought stress	8.490

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.169
DRR006520	Root Summer glycyrrhizin high producing strain	6.540
DRR006521	Root Winter glycyrrhizin high producing strain	5.650
DRR006522	Root Winter glycyrrhizin high producing strain	5.324
DRR006523	Root Summer glycyrrhizin low producing strain	7.040
DRR006524	Root Summer glycyrrhizin low producing strain	6.552
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.739
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.602

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.262
SRR2868004	Drought Stress (root)	10.953
SRR2967015	Control (root)	10.950

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.802
SRR9715740	Leaf	5.864
SRR9715741	Leaf	5.680
SRR9715739	Root	1.941
SRR9715742	Root	7.098
SRR9715743	Root	6.084

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.058
SRR8749028	MeJA induced 9h	9.092
SRR8749029	MeJA induced 9h	5.663
SRR8749030	Uninduced	5.324
SRR8749031	Uninduced	4.126
SRR8749032	Uninduced	3.484

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.700
SRR8400027	Control - Root	8.802