Gene detail

Gene detail information of Glyur003164s00038817

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49220.1	2.00E-44	Protein of unknown function (DUF789)
NR	XP_003550548.1	2.81E-176	PREDICTED: uncharacterized protein LOC100803393 [Glycine max]
trEMBL	tr\|K7MJP4\|K7MJP4_SOYBN	1.00E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G03370.2}

Sequence

Transcript Sequence

>Glyur003164s00038817.1
ATGTCGGTCTCCGGTGACGCCGCCATCGCCGGCCGGCGGAACCACCGGCATCTCGGCGAGAGCCGGTTTTACAGCCCNCCACCGTTGCGGAAACACAGACAAAAACAGGAACAAAAGCAGGAGCCGGGGCCAACTTTGTCGGAGAACAGGCCCAGTTCCTCTTCCGGTTGCTCCGTTNCTTCTTCTTCGCGTAGGACAACATGTGACGCCTCCAATTTGTGTCGGTTCTTGGAGCACACCACGCCTCTTGTTCCCGCCCAATATTTTCCCATGAGAAGTAAGAGGAGATGGAAAACAATGGAGGCAGAGTTGCATCCATACTTTGTGCTTGGGGACTTNTGGGAATCTTTCAAGGAGTGGAGTGCATATGGGGCTGGTGTTCCATTGGTGTTGGATGGGAATGAATCCGTCACACAGTATTACAATGTCTCCTTGTCTGCTATTCAGCTTTATATTGATCCATCAAATTCAAAACCTTCCCCGCGGTTAAGGCACCTATGTCCTACCCTTTTCCATGCNCCAGTTACCGCTTTGGCTGAATTACAAGACTTGGCAAACCGCATTTTTATTTCATCTATACAACAGATTACAGATTCATTCACATTTCCATGGTATTACAGGAGACCTAGTCAGGAGAGTGACTCTGAATCAACTAGAGAAACAAGCAGTGATAGCAGCAGTGGCTATTGTCATGAAAGAGGAGCTAAGAGTGTAGCTAATGGCAGTTGGAACCACCTTAACTTGTCAGATGCAACCAACCATGGTCTGGAAAGAGTTTCACTAAGAAGTAAACCTTTCACAGCAGGTTCATCAAGCGATGAGAATGAGAGCTGCAATCCACNTGGTCAGCTTATTTATGATCTTGCTTGTCAATTTCCTGAGTTGAAGACATACCGGAGCTGTGATCTTTTGCCTGCAAGTTGGGTTTCATTGGCATGGTATCCGATATATAGAATACCTACCGGTCCCACACTACAGAACATGAGCGCCTGCTTCCTGACCTTTCATTCCCTATCAACAGCTTCACAAAGTCCAACTACTGATGGGTTTCATATTCCTTGTTCAAGAGAGAGGGAGATATCATCCAAGCTATCATTACCAATCTTTGGGCTTGCCTTCAATAAGTTCAAAGTTTCTGTCTGGGATCCTGATGAGGTTTGTGAAGGGCTGAAAGCCAGTTCTCTGTTGCGAGCNGCAGACAACTGGATTAGGCTATTGCAAGTTAACCATCCTGATTACAATTACTTCATGTCCCATTATTCATATTGGAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03164	17165	19788	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003164s00038817.1	PF05623.7	DUF789	71	416	4.90E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.402
SRR1783600	control	1.372
SRR1783602	moderate drought stress	1.123
SRR1811619	moderate drought stress	1.162

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.221
DRR006520	Root Summer glycyrrhizin high producing strain	3.279
DRR006521	Root Winter glycyrrhizin high producing strain	1.181
DRR006522	Root Winter glycyrrhizin high producing strain	1.261
DRR006523	Root Summer glycyrrhizin low producing strain	0.900
DRR006524	Root Summer glycyrrhizin low producing strain	0.912
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.630
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.116
SRR2868004	Drought Stress (root)	3.557
SRR2967015	Control (root)	2.972

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.700
SRR9715740	Leaf	0.889
SRR9715741	Leaf	0.487
SRR9715739	Root	0.731
SRR9715742	Root	1.610
SRR9715743	Root	1.790

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.727
SRR8749028	MeJA induced 9h	2.144
SRR8749029	MeJA induced 9h	0.333
SRR8749030	Uninduced	0.315
SRR8749031	Uninduced	0.153
SRR8749032	Uninduced	0.235

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.188
SRR8400027	Control - Root	3.204