Gene detail

Gene detail information of Glyur003161s00042700

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65380.1	4.00E-151	MATE efflux family protein
NR	XP_006578309.1	0	PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Glycine max]
COG	YP_003264696.1	6.00E-23	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	4.00E-92	Protein TRANSPARENT TESTA 12
trEMBL	tr\|I1JVA1\|I1JVA1_SOYBN	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur003161s00042700.1
ATGGGCAGCATCAACAGCAACGAAGATCCCAGTCTCATCCAATCCCTCCTGTCAACAGAAGTGGCCATTCACGCATCACAACATGACCAAACCACCGATGAGGAGAAACAAAGGTTTGGTAAGAAGCTATGGATCGAGACCAAGAATCTATGGCTCATCGTTGGTCCCTCCATCTTCAGCCGCGTCGCAGCATTCACCATGAACGTTGTTACCCAAGCCTTCGCCGGTCACCTAGGTGACGTCGAGCTCGCTGCCATTTCCATCGCCAACAACGTCATCTTGGGTATGGCGAGCGCGTTGGAGACATTGTGCGGGCAAGCGTTTGGGGCAAAGAGATACCACATGTTAGGCATATACATGCAGAGGTCATGGATTGTTCTGTTCCTCTGCTGTTTCCTGTTACTNCCCTTTTACGTTTTCGCCACTCCGATTCTCAAGCTTTTGGGGCAACCCGATGACGTGGCAGAGTGGAGCGGTGTCGTNGCTATGTGGCTTATACCTCTGCATTTTAGTTTCGCATTTCAGTTCCCTCTGCAGAGGTTCCTCCAATGCCAGCTCAAAACCGTTGTCATTGCTTGGGTCTCCTTGCTTGGTTTGGTGGTTAACGTTGTCACTAGCTGGCTCTTGATTTACGTTTGGGATTTTGGACTTCTTGGTGCTGCTATTTCCTTGGATGTTTCTTGGTGGGTTTTGGTGTTTGGCATGTATGGTTATACGGCTTTTGGTGGTTGCCCTTTAACTTGGAGTGGTTTTTCCTTGGAAGCCTTTTCTGGACTATGGGAATTCTTCAAACTCTCTTTTGCTTCTGGGGTCATGCTCTGCTTAGAGAACTGGTACTACAGAATACTCTTACTTATGACTGGCAAGTTGGAGAATGCTACTGTTGCCGTTGATGCCTTGTCTGTATGTATGACTATAAACGGTTGGGAAATGATGATTCCCCTGGCTTTCTTCGCTGGTACTGGGGTAAGAGTGGCAAACGAACTAGGTGCGGGCAATGGGAAAGCAGCAAAATTTGCAACGCAAGTATCAGTGGCACAATCAACAGTGATTGGGCTCCTCTTTTGCGTTCTCATAATGATATTCCATAACCAGTTNGCATACATATTCACCTCCAGCTCTTCTGTGCTTCAAGCCGTTGACGACATGTCAATCCTCTTAGCAGTTACCATTCTTCTCAACAGTGTTCAACCCGTTTTGTCAGGAGTAGCCGGCATCTGGGGTGGAATGATCTTGGGTGGCACAGCAATGCAAACACTNATACTGCTCATAGTAACGGTGCGATGTGATTGGGAAAAAGAGGTAGAGTTCAACACAAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03161	20294	25062	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003161s00042700.1	PF01554.13	MatE	56	208	2.70E-27
Glyur003161s00042700.1	PF01554.13	MatE	270	404	2.90E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.841
SRR1783600	control	0.746
SRR1783602	moderate drought stress	0.675
SRR1811619	moderate drought stress	0.761

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.330
DRR006520	Root Summer glycyrrhizin high producing strain	1.257
DRR006521	Root Winter glycyrrhizin high producing strain	0.895
DRR006522	Root Winter glycyrrhizin high producing strain	0.772
DRR006523	Root Summer glycyrrhizin low producing strain	1.637
DRR006524	Root Summer glycyrrhizin low producing strain	1.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.007
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.850

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.941
SRR2868004	Drought Stress (root)	2.534
SRR2967015	Control (root)	1.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.508
SRR9715740	Leaf	5.183
SRR9715741	Leaf	16.417
SRR9715739	Root	0.776
SRR9715742	Root	10.438
SRR9715743	Root	9.508

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.521
SRR8749028	MeJA induced 9h	31.972
SRR8749029	MeJA induced 9h	29.372
SRR8749030	Uninduced	25.347
SRR8749031	Uninduced	20.580
SRR8749032	Uninduced	24.604

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.394
SRR8400027	Control - Root	2.423