Gene detail information of Glyur003161s00042699 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G40080.1 | 5.00E-40 | ENTH/ANTH/VHS superfamily protein |
| NR | XP_003526565.1 | 0 | PREDICTED: putative clathrin assembly protein At4g40080-like [Glycine max] |
| Swissprot | tr|Q8L936|CAP16_ARATH | 2.00E-57 | Putative clathrin assembly protein At4g40080 |
| trEMBL | tr|I1K9U2|I1K9U2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G10450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03161 | 16711 | 17880 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003161s00042699.1 | PF07651.11 | ANTH | 70 | 265 | 3.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.970 |
| SRR1783600 | control | 2.898 |
| SRR1783602 | moderate drought stress | 4.024 |
| SRR1811619 | moderate drought stress | 3.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 79.744 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 73.816 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.935 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.182 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 109.953 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 110.122 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.047 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.760 |
| SRR2868004 | Drought Stress (root) | 73.373 |
| SRR2967015 | Control (root) | 194.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 78.494 |
| SRR9715740 | Leaf | 69.159 |
| SRR9715741 | Leaf | 97.933 |
| SRR9715739 | Root | 152.099 |
| SRR9715742 | Root | 230.873 |
| SRR9715743 | Root | 210.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 174.544 |
| SRR8749028 | MeJA induced 9h | 302.114 |
| SRR8749029 | MeJA induced 9h | 162.300 |
| SRR8749030 | Uninduced | 285.270 |
| SRR8749031 | Uninduced | 364.269 |
| SRR8749032 | Uninduced | 198.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.138 |
| SRR8400027 | Control - Root | 31.981 |