Gene detail

Gene detail information of Glyur003152s00037489

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71691.2	9.00E-136	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_004499570.1	0	PREDICTED: GDSL esterase/lipase At1g71691-like [Cicer arietinum]
COG	YP_007095445.1	7.00E-17	phospholipase/lecithinase/hemolysin [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q9SF78\|GDL29_ARATH	1.00E-168	GDSL esterase/lipase At1g71691 (Precursor)
trEMBL	tr\|I1JZD2\|I1JZD2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G43480.1}

Sequence

Transcript Sequence

>Glyur003152s00037489.1
ATGGCTAGGTCTCCATTGTTGGTGCTTTTCATGATATTGAGTGGTGCACTAGTCAGTGTGACAGGACAGAATGGTAGCACTAGGAGAGAACTGGTGCCTGCCATGTTCATATTTGGTGACTCCCTCATTGACAATGGCAACAACAACAACCTTCCTTCCTTTGCNAAGGCCAACTATTTCCCATATGGCATCGACTTCAATGGAGGCCCCACTGGTCGCTTCTCTAATGGTTACACCGTTGTTGATGAAATAGCCGAACTGCTTGGACTTCCCTTAATTCCTGCATACAANGGAGCCTTCAGGAATCAAGTGGTTCATGGAGTAAACTACGCTTCAGCNGCTTCTGGAATCCTTGACGCCACTGGAAGAAACTTTGNGCAGGTTGGGCGCATACCATTTGATGTGCAAATTAGGAACTTTGAGAACACATTGAATCAAATCACTGGAAACCTTGGAGCAGACTATATGGCCACAGTGCTTTCAAGGTGCATATTCTTTGTTGGAATGGGCAGCAATGACTACCTAAATAACTACCTCATGCCTAANTATCCAACCAGAAATCAGTACAATGGGCAACAGTATGCTGACCTCTTGGTCCAAACATACAAGCAGCAACTCTATAGGCTTTACAATCTTGGAGCAAGGAAAATTGTGGTAACTGGACTGGGGCTAATGGGATGTATTCCAAGCATATTGGCTCAAAGCATGACTGGAAGCTGCTCTAATGAAGTGAACTTACTAGTTCAACCCTTCAATGAAAATGTGAAGACCATGTTGAGCAATTTCAATAATAATCTGCCTGGTGCCAGATTCACTTTCATTGATACTGCCCGCATGTTCCAGCACATCCTTCTCAATGCTAGATCTTATGGGTTTACTGTTGTGAATAAAGGGTGCTGTGGCATTGGAAGAAACAGAGGTCAAATCACATGTCTTCCTTTCCAAACTCCATGTCCTAACAGAAACCAGTATGTGTTCTGGGATGCATTCCACCCAACAGAAGCAGCCAACATTCTGATGGGAAGGATGGCTTTTGATGGGAACACCAATTTTGTTTATCCTATGAACATTAGGCAACTTGCTGAACTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03152	1157	4593	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003152s00037489.1	PF00657.17	Lipase_GDSL	36	341	2.10E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.033
SRR1783600	control	0.030
SRR1783602	moderate drought stress	0.104
SRR1811619	moderate drought stress	0.099

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.694
DRR006520	Root Summer glycyrrhizin high producing strain	0.683
DRR006521	Root Winter glycyrrhizin high producing strain	0.101
DRR006522	Root Winter glycyrrhizin high producing strain	0.099
DRR006523	Root Summer glycyrrhizin low producing strain	0.201
DRR006524	Root Summer glycyrrhizin low producing strain	0.202
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.084
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.050

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.666
SRR2868004	Drought Stress (root)	1.260
SRR2967015	Control (root)	1.037

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.625
SRR9715740	Leaf	0.180
SRR9715741	Leaf	0.718
SRR9715739	Root	0.099
SRR9715742	Root	0.195
SRR9715743	Root	0.660

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.582
SRR8749028	MeJA induced 9h	41.993
SRR8749029	MeJA induced 9h	50.853
SRR8749030	Uninduced	98.688
SRR8749031	Uninduced	70.307
SRR8749032	Uninduced	55.709

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.944
SRR8400027	Control - Root	1.168