Gene detail

Gene detail information of Glyur003130s00042622.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22980.1	0	Ribosomal protein S5/Elongation factor G/III/V family protein
NR	XP_004498119.1	0	PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum]
COG	NP_342235.1	5.00E-49	elongation factor EF-2 [Sulfolobus solfataricus P2]
Swissprot	tr\|O23755\|EF2_BETVU	2.00E-139	Elongation factor 2
trEMBL	tr\|G7JKA7\|G7JKA7_MEDTR	0	Elongation factor Tu family protein {ECO:0000313\|EMBL:AES91827.1}

Sequence

Transcript Sequence

>Glyur003130s00042622.1
ATGGAGGAGGAAACATGCGAAAGCGACAGGCNCAAAATCCGGAACATATGCATCCTTGCACACGTGGACCACGGCAAGACGACGCTGGCGGACCAGCTGATAGCGACGGCGGGCGGCGGAGTTGTCCACCCGAAGGTAGCGGGTCGGGTCCGTTTCATGGACTACCTCGACGAGGAGCAGCGCCGCGCCATCACGATGAAGAGCTCCTCCATCGCCCTAACCTACCGCAACAACCACACCGTGAACCTCATCGACTCACCGGGACACATCGACTTCTGCGGCGAGGTCTCCACCGCCGCGCGTCTCTCCGACGGCGCACTCCTCCTCGTCGACGCCGTCGAGGGCGTCCACATCCAGACCCACGCCGTACTCCGTCAGTGTTGGATCGAACGCCTCTCCCCTTGCCTCGTACTCAACAAGCTCGACCGATTGATCACCGAGCTCAAACTCACTCCCTCCGAGGCCTACACGCGCCTCTTAAGGATCGTTCACGAGGTTAACGGCATCGTCAGCGCCTACAAGTCTCAGAAGTACCTCTCCGATGTCGATTCGCTCCTCGCCGGAACCGGTTCCGGCGAGGAGGTTGGCATCGAGGACTATTACGACGACGACGAGGATGTCTTTCAGCCTCAGAAGGGGAATGTGGTTTTCGCGTGTGCTTTGGACGGCTGGGGTTTTGGTGTTCATGAGTTTGCTGAGATTTATGCTTCGAAGCTTGGTGCTAGTGTCGGTGCGTTGCAGAAGGCTCTGTGGGGCCCGCGGTATTTTAACCCCAAGACGAAGATGATTGTTGGGAAGAAGGGAATTGGTGGTGGAAAAGCTAAGCCTATGTTTGTTCAGTTTGTGTTGGAACCGTTGTGGCAGGTTTATCAGGGTGCTCTTGAGGGGGATAGAGGGTTGCTTGAGAAGGTTATTAGGTCGTTTAATTTGCAGGTTCCGGCGCGGGAGTTGCAGAATAAGGATGCTAAGGTGGTGCTTCAGGCGGTTATGAGCCGGTGGCTTCCTCTTTCGGACACCATTTTGTCGATGGTGGTGAAGTGTTTGCCGGACCCTGTTGCCGCGCAGTCCTCTCGGATNGCGCGGCTGATTCCGGAGCGCGAGGTTGTTGGGGACGGTGTGGGGATTGATCGTAGTGTGGTGGAGGAGGCCNGGCTTGTGAGGAGAGCGGTGGAACNGTGNGATTGGAGGCCTGAGGCTCCTTGTGTTGCCTTTGTGGCAAAGATGTTTGCTGTCCCTGTTAGAATGCTTCCTCCTTCCCAATATGGGGAGGTTAGTGGTGATGAAGGGGAAGGTGAGTCTGATGAGTGTTTCCTGGCTTTCGCGAGGATCTTTAGCGGGGTTTTGTCTGCGGGACAGAGAGTTTTCNTGCTTTCTGCTTTGTATGATCCGTTGAAAGGAGGGGAATCGATGCAGAAGCATATGCAGGAGGCTGAATTGAAATCCCTGTATCTGATGATGGGCCAAGGGTTGAAAGTAGTGAAATCAGCCAAAGCAGGAGATGTTGTTGCTATCCGAGGACTTGGGCAGCATATATTGAAGAGTGCAACCCTTTCTTCCACTAGGAACTGTTGGCCATTTTCGAGTATGGCGTTTCAGGTTGCCCCGACTTTAAGAGTTGCTATTGAGCCGTCTGACCCTGCGGATATGGGTGCAATGCTCAAAGGGTTGAGGCTTCTGAATAGGGCGGATCCGTTTGTTGAGCTCACGGTATCCGCGAGAGGAGAGCATGTTCTTGCTGCAGCCGGTGAGGTTCATCTTGAGAGATGCGTAAAGGACTTGAAGGAGAGGTTTGCGAAAGTAAGCTTGGAAGTCTCTCCGCCCCTTGTGTCCTACAAGGAAACCATTGAGGGAGAGATATCCAATGTGCTGGAAAATTTGAAAACTCTTAGCAGGAGCTCGGATTATGTGGAGAAAACAACACCCAATGGAAGATGTGTTGTTCGTGTGCAGGTGATGAAACTTCTACCTTCTCTTACGAAGGTGCTCGATGAAAGCTCCGATTTACTTGCAGATGTCATTGGAATAAAGTCAGGGCAGACAGTTAAAAGCTTGGAAACACAGAGACCGGGTATTCTCGAAAATGATGATCCGGCTGAAGTGCTACAAAGACGCATAATGGATGCCTTGGAGGGTGATATTTTGAGCAGGCATGAGAATGACAAAGACCATGCTGAGAAATGTAAATTGAAGTGGCAAAAGCTTTTGAGGAGGATATGGGCACTTGGACCAGGGCATGTTGGTGCTAATGTTCTCTTTACTCCTGATGCTAAAGCAGAAAGTACTGATACCTCTGTTCTAATACGTGGTTGTTCTCATATATCTGAAAGGTTGGGCTTTGTAACTGATTCTGGTAACAGTAACTCGGTTTCAGAGCCTTCTTCAAATGAGAGCCAAACCTTGTACATGGATGCCGAGCGTCTCGAGAGTAGTGTCATAACCGGGTTCCAACTAGCAGCTTCAGCTGGACCCTTGTGTGATGAACCTATGTGGGGTTTGGCATTTGTCATTGAGGCGCGTATATCTCCATTCACAGGGCATTATGATGAATCTGAAACACACCAACAATCTGATCAGTATGGCATCTTTGCAGGGCAGGTAATTGCAACTGTCAAAGATGCTTGTAGAGCAGCTGTGCTTCAGAATAAGCCACGGCTTGTCGAAGCGATGTACTTCTGCGAATTGAATACCCCTACTGAGTTTTTGGGCCCCATGTATGCTGTACTTTCGCGAAGACGGGCTCGAATTCTGAAGGAAGAGATGCAGGAAGGTTCACCTTTCTTCACTGTGCATGCATATGTTCCAGTTTCAGAGAGCTTTGGTTTCGCAGATGAGCTTAGAAGGTGGACTTCTGGCGCTGCAAGCGCGCTTCTCGTCCTTAGTCACTGGGAAGCACTTCCTGAGGATCCTTTCTTTGTCCCTAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTTCCAAATACAGCAAGAAAGTTAATTGATGCAGTAAGACGGCGAAAGGGCCTTCCTGTGGAGGAAAAGGTAGTACAACATGGAACCAAGCAGAGGACACGAGCTCGTAAAGTTTGA

Protein Sequence

>Glyur003130s00042622.1
MEEETCESDRXKIRNICILAHVDHGKTTLADQLIATAGGGVVHPKVAGRVRFMDYLDEEQRRAITMKSSSIALTYRNNHTVNLIDSPGHIDFCGEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKLDRLITELKLTPSEAYTRLLRIVHEVNGIVSAYKSQKYLSDVDSLLAGTGSGEEVGIEDYYDDDEDVFQPQKGNVVFACALDGWGFGVHEFAEIYASKLGASVGALQKALWGPRYFNPKTKMIVGKKGIGGGKAKPMFVQFVLEPLWQVYQGALEGDRGLLEKVIRSFNLQVPARELQNKDAKVVLQAVMSRWLPLSDTILSMVVKCLPDPVAAQSSRXARLIPEREVVGDGVGIDRSVVEEAXLVRRAVEXXDWRPEAPCVAFVAKMFAVPVRMLPPSQYGEVSGDEGEGESDECFLAFARIFSGVLSAGQRVFXLSALYDPLKGGESMQKHMQEAELKSLYLMMGQGLKVVKSAKAGDVVAIRGLGQHILKSATLSSTRNCWPFSSMAFQVAPTLRVAIEPSDPADMGAMLKGLRLLNRADPFVELTVSARGEHVLAAAGEVHLERCVKDLKERFAKVSLEVSPPLVSYKETIEGEISNVLENLKTLSRSSDYVEKTTPNGRCVVRVQVMKLLPSLTKVLDESSDLLADVIGIKSGQTVKSLETQRPGILENDDPAEVLQRRIMDALEGDILSRHENDKDHAEKCKLKWQKLLRRIWALGPGHVGANVLFTPDAKAESTDTSVLIRGCSHISERLGFVTDSGNSNSVSEPSSNESQTLYMDAERLESSVITGFQLAASAGPLCDEPMWGLAFVIEARISPFTGHYDESETHQQSDQYGIFAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTEFLGPMYAVLSRRRARILKEEMQEGSPFFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDAVRRRKGLPVEEKVVQHGTKQRTRARKV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03130	12922	16002	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14536	RIA1	EC:3.6.5.-	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003130s00042622.1	PF00009.22	GTP_EFTU	12	299	3.60E-49
Glyur003130s00042622.1	PF03144.20	GTP_EFTU_D2	438	518	5.10E-08
Glyur003130s00042622.1	PF14492.1	EFG_II	535	602	1.80E-06
Glyur003130s00042622.1	PF00679.19	EFG_C	885	969	8.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.950
SRR1783600	control	4.955
SRR1783602	moderate drought stress	6.201
SRR1811619	moderate drought stress	5.931

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.325
DRR006520	Root Summer glycyrrhizin high producing strain	10.332
DRR006521	Root Winter glycyrrhizin high producing strain	6.398
DRR006522	Root Winter glycyrrhizin high producing strain	6.166
DRR006523	Root Summer glycyrrhizin low producing strain	8.868
DRR006524	Root Summer glycyrrhizin low producing strain	8.856
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.426
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.384

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.847
SRR2868004	Drought Stress (root)	15.588
SRR2967015	Control (root)	15.372

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.457
SRR9715740	Leaf	7.661
SRR9715741	Leaf	7.424
SRR9715739	Root	9.470
SRR9715742	Root	14.669
SRR9715743	Root	15.125

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.875
SRR8749028	MeJA induced 9h	6.050
SRR8749029	MeJA induced 9h	3.228
SRR8749030	Uninduced	2.934
SRR8749031	Uninduced	2.538
SRR8749032	Uninduced	3.073

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.408
SRR8400027	Control - Root	11.363