Gene detail information of Glyur003126s00045853 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11180.1 | 1.00E-40 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | AES86871.2 | 3.64E-73 | leucoanthocyanidin dioxygenase-like protein [Medicago truncatula] |
| COG | NP_248837.1 | 1.00E-09 | oxidoreductase [Pseudomonas aeruginosa PAO1] |
| Swissprot | tr|Q96323|LDOX_ARATH | 7.00E-24 | Leucoanthocyanidin dioxygenase |
| trEMBL | tr|G7JP17|G7JP17_MEDTR | 1.00E-73 | Leucoanthocyanidin dioxygenase-like protein {ECO:0000313|EMBL:AES86871.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03126 | 27519 | 27950 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003126s00045853.1 | PF14226.1 | DIOX_N | 62 | 140 | 7.70E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.037 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.119 |
| SRR1811619 | moderate drought stress | 0.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.977 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.457 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.701 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.033 |
| SRR2868004 | Drought Stress (root) | 0.114 |
| SRR2967015 | Control (root) | 0.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.728 |
| SRR9715740 | Leaf | 2.518 |
| SRR9715741 | Leaf | 4.708 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.641 |
| SRR9715743 | Root | 0.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.035 |
| SRR8749028 | MeJA induced 9h | 0.256 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 27.508 |
| SRR8749031 | Uninduced | 6.464 |
| SRR8749032 | Uninduced | 8.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.475 |
| SRR8400027 | Control - Root | 0.059 |