Gene detail

Gene detail information of Glyur003126s00045852

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38240.1	1.00E-27	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003604674.1	3.07E-45	Leucoanthocyanidin dioxygenase [Medicago truncatula]
COG	YP_001264730.1	1.00E-09	2OG-Fe(II) oxygenase [Sphingomonas wittichii RW1]
Swissprot	tr\|Q08508\|ACCO4_PETHY	1.00E-12	1-aminocyclopropane-1-carboxylate oxidase 4
trEMBL	tr\|G7JP17\|G7JP17_MEDTR	1.00E-45	Leucoanthocyanidin dioxygenase-like protein {ECO:0000313\|EMBL:AES86871.2}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03126	21939	25411	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003126s00045852.1	PF03171.15	2OG-FeII_Oxy	6	40	3.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.261
SRR1783600	control	0.263
SRR1783602	moderate drought stress	0.204
SRR1811619	moderate drought stress	0.271

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.400
DRR006522	Root Winter glycyrrhizin high producing strain	0.195
DRR006523	Root Summer glycyrrhizin low producing strain	0.196
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.491
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.203

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.092
SRR2868004	Drought Stress (root)	0.346
SRR2967015	Control (root)	0.510

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.482
SRR9715740	Leaf	15.989
SRR9715741	Leaf	25.384
SRR9715739	Root	0.080
SRR9715742	Root	2.051
SRR9715743	Root	2.698

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.207
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	38.529
SRR8749031	Uninduced	14.142
SRR8749032	Uninduced	61.582

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.707
SRR8400027	Control - Root	0.147