Gene detail information of Glyur003123s00042403 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69550.1 | 2.00E-38 | disease resistance protein (TIR-NBS-LRR class) |
| NR | XP_003613758.1 | 3.43E-123 | Disease resistance-like protein [Medicago truncatula] |
| COG | NP_522436.1 | 4.00E-14 | POPC protein [Ralstonia solanacearum GMI1000] |
| Swissprot | tr|O23530|SNC1_ARATH | 7.00E-26 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
| trEMBL | tr|G7KDY8|G7KDY8_MEDTR | 1.00E-123 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:AES96716.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03123 | 1323 | 3560 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003123s00042403.1 | PF13504.1 | LRR_7 | 52 | 69 | 3.3 |
| Glyur003123s00042403.1 | PF13504.1 | LRR_7 | 320 | 337 | 4.4 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.238 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.681 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.222 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.356 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.105 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.876 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.624 |
| SRR2868004 | Drought Stress (root) | 6.822 |
| SRR2967015 | Control (root) | 7.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.025 |
| SRR8400027 | Control - Root | 0.000 |