Gene detail

Gene detail information of Glyur003122s00045704

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11175.1	1.00E-24	Nucleic acid-binding, OB-fold-like protein
NR	XP_004517199.1	8.16E-57	PREDICTED: translation initiation factor IF-1, chloroplastic-like [Cicer arietinum]
COG	YP_007134525.1	3.00E-24	Translation initiation factor IF-1 [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q94KR7\|IF1C_SOYBN	4.00E-46	Translation initiation factor IF-1, chloroplastic (Precursor)
trEMBL	tr\|G7LDQ8\|G7LDQ8_MEDTR	8.00E-57	Translation initiation factor IF-1 {ECO:0000313\|EMBL:AET03016.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03122	14588	15043	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006413 translational initiation

molecular_function

GO:0003723 RNA binding

GO:0003743 translation initiation factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003122s00045704.1	PF01176.14	eIF-1a	81	141	3.70E-22

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	48.927
SRR1783600	control	49.648
SRR1783602	moderate drought stress	37.700
SRR1811619	moderate drought stress	37.551

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.783
DRR006520	Root Summer glycyrrhizin high producing strain	39.231
DRR006521	Root Winter glycyrrhizin high producing strain	15.962
DRR006522	Root Winter glycyrrhizin high producing strain	18.465
DRR006523	Root Summer glycyrrhizin low producing strain	38.574
DRR006524	Root Summer glycyrrhizin low producing strain	37.935
DRR006525	Leaf Summer glycyrrhizin high producing strain	248.713
DRR006526	Leaf Summer glycyrrhizin high producing strain	246.680

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.755
SRR2868004	Drought Stress (root)	24.131
SRR2967015	Control (root)	22.377

SRA Experiment	Description	TPM
SRR9715738	Leaf	156.731
SRR9715740	Leaf	166.217
SRR9715741	Leaf	138.346
SRR9715739	Root	35.290
SRR9715742	Root	33.810
SRR9715743	Root	31.906

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.447
SRR8749028	MeJA induced 9h	23.590
SRR8749029	MeJA induced 9h	16.761
SRR8749030	Uninduced	10.538
SRR8749031	Uninduced	6.002
SRR8749032	Uninduced	12.563

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.904
SRR8400027	Control - Root	23.132