Gene detail information of Glyur003120s00035873 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04220.1 | 1.00E-16 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | AES66938.2 | 1.21E-82 | disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula] |
| COG | NP_484168.1 | 7.00E-11 | hypothetical protein alr0124 [Nostoc sp. PCC 7120] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 2.00E-19 | TMV resistance protein N |
| trEMBL | tr|G7IM52|G7IM52_MEDTR | 5.00E-83 | Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313|EMBL:AES66938.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03120 | 23023 | 25502 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003120s00035873.1 | PF13504.1 | LRR_7 | 21 | 32 | 4.4 |
| Glyur003120s00035873.1 | PF00560.28 | LRR_1 | 45 | 65 | 0.36 |
| Glyur003120s00035873.1 | PF00560.28 | LRR_1 | 69 | 89 | 1.1 |
| Glyur003120s00035873.1 | PF00560.28 | LRR_1 | 93 | 110 | 0.11 |
| Glyur003120s00035873.1 | PF12799.2 | LRR_4 | 116 | 153 | 1.40E-08 |
| Glyur003120s00035873.1 | PF00560.28 | LRR_1 | 162 | 182 | 0.32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.976 |
| SRR1783600 | control | 4.091 |
| SRR1783602 | moderate drought stress | 2.724 |
| SRR1811619 | moderate drought stress | 2.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.973 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.981 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.656 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.856 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.571 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.772 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.557 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.883 |
| SRR2868004 | Drought Stress (root) | 7.694 |
| SRR2967015 | Control (root) | 5.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.770 |
| SRR9715740 | Leaf | 4.652 |
| SRR9715741 | Leaf | 9.476 |
| SRR9715739 | Root | 0.609 |
| SRR9715742 | Root | 2.196 |
| SRR9715743 | Root | 2.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.322 |
| SRR8749028 | MeJA induced 9h | 3.806 |
| SRR8749029 | MeJA induced 9h | 1.173 |
| SRR8749030 | Uninduced | 2.221 |
| SRR8749031 | Uninduced | 4.871 |
| SRR8749032 | Uninduced | 2.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.567 |
| SRR8400027 | Control - Root | 5.466 |