Gene detail

Gene detail information of Glyur003120s00035872.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33070.1	0	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
NR	AAO72533.1	0	pyruvate decarboxylase 1 [Lotus corniculatus]
COG	YP_007568556.1	3.00E-170	Pyruvate decarboxylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
Swissprot	tr\|O82647\|PDC1_ARATH	0	Pyruvate decarboxylase 1
trEMBL	tr\|Q84V95\|Q84V95_LOTCO	0	Pyruvate decarboxylase 1 {ECO:0000313\|EMBL:AAO72533.1}

Sequence

Transcript Sequence

>Glyur003120s00035872.1
CAGGAAACCGCCCGTGGTATCTGCCCCAACACTGGTCTTCCTTTCCATTTCCAGTACCTCCCACTNTGTTTCCTCTTACCACTCTCCCAACACGCACCACAGAGAAAAGCCTTGTATATAAATAACAATCGCTCTTCCCACATTCATACCCAACCTTCTAAGAAAACCTCATATTTGCTCTGTTTTCTTTTCTTCTTAGACCAAACAAACTTTTCAAATATCCACCATCACATCACATTACACACAAACTTTTGATCATAAAACCAAAGTACCCATCCAACAAAAAAAAAAAAAAGCAAGAGCTTATTCTCTTGTTTCACACTCTTTCTCGTTGAACCTCGGAAAATCCGAGTCCCATCACTCACCAACGACACGATGGACACAAACTTGGGCTCTTTGGAAGCGACTAAGCCAGCGAGCAACGACGTCGTATCGTGCGCCGGGACGAACAGCACGGCGATCCAGCCCTGTATCCCCTCGACGGCGGTTTCCTCCGGCGACGCCACCCTCGGAGGCCACCTGGCGCGGAGGCTGGTCGAAATCGGCGTCACCGACGTGTTCTCCGTTCCCGGAGACTTCAACCTGACGCTGCTCGACCACCTCGTCGCTGAGCCGGAGCTCAACCTCGTCGGCTGCTGCAACGAGCTCAACGCCGGGTACGCCGCCGACGGCTACGCCCGCTCACGCGGCGTCGGTGCCTGCGTTGTCACCTTCACCGTCGGTGGCCTCAGCGTTCTCAACGCCATCGCCGGTGCTTACAGCGAGAACTTGCCGCTTATTTGCATCGTTGGTGGACCCAACTCCAACGACTACGGCACCAATCGGATCCTTCACCACACCATTGGGTTATCCGATTTCAGCCAAGAGTTGAGGTGTTTTCAAACCGTTACTTGCTTCCAGGCTGTGGTGAATCACTTGGAAGATGCTCATGAGCTGATTGATACAGCAATCTCAACCTCACTCAAAGAGAGCAAGCCTGTGTACATAAGCATTAGCTGTAACCTGGCAGCAGTTCCTCACCCTACTTTCACCCGTGATCCTGTTCCTTTTGTATTGTCTCCCAAATTGAGTAACCAGATGGGGTTGGAGGCAGCAGTGGAGGCAGCCGCAGAGTTCCTTAACAAGGCAGTGAAACCGGTACTAGTGGGTGGTCCTAAACTGAGGGTGGCAAAAGCATCTAATGCCTTTGTTGAACTGGCTGATGCTAGTGGTTATGCACTAGCTGTGATGCCATCAGCTAAAGGGCTAGTTCCAGAGCACCACCCCCATTTCATTGGAACATACTGGGGTGCTGTGAGTACTGCATTCTGTGCTGAGATTGTTGAGTCTGCTGATGCATACTTGTTTGCTGGCCCCATTTTCAATGACTACAGCTCTGTGGGGTATTCACTTCTTCTCAAGAAAGAGAAGGCAATCATTGTGCAGCCCGAACGCGTTGTGATCGCTAATGGTCCTGCATTTGGGTGTGTGCTGATGAAGGATTTCCTCAGTGCACTTGCAAAGCGTCTCAAGCACAACAAGGCTGCATATGAAAACTACCACAGGATATTTGTCCCACAAGGGCATCCTTTGAAGTCTGCACCCAAAGAACCTTTGAGGGTTAATGTTATGTTCCAACATATACAACAGATGCTGTCTGGTGATTCAGCTGTAATTGCTGAGACAGGGGACTCATGGTTTAACTGCCAAAAGTTGAAATTGCCAAAGGGATGTGGGTATGAGTTCCAAATGCAATATGGTTCAATTGGATGGTCTGTTGCAGTCCCTGAGAAGCGAGTGATTGCTTGCATTGGTGATGGAAGTTTTCAGGTAACTGCCCAAGATATATCAACAATGATGCGATGCGGTCAAAAGACCATCATCTTCCTGATAAACAATGGTGGATACACTATTGAGAACTGGAATTACACTGCATTGGTTGATGCAATCCACAATGGTGAAGGGAAATGCTGGACTGCCAAGGTCTTCTGTGAAGAGGAGCTAGTTGAAGCAATTGCCACAGCAACAGGACCAAAGAAAGATTGCTTATGCTTCATTGAGGTGATTGTTCACAAGGATGATACCAGCAAAGAGTTGCTTGAGTGGGGCTCTAGGGTCTCTGCTGCTAATAGCCGCCCTCCCAATCCTCAGTAAACTTCAGGATCAGCCTATAATATTACTACTCCATTGCTGGAATTGCCCTTTGACTCGCAAAATTGAGAACCCCCTTTAAGATGTGTCCTTTTACGGAATTTACTTTTCTTGATGGCTTGCTGGTTTATGTATNCACTGCATCTTTGCTTGGTTTGTCGGTGGAAAAGAAAACATTTGGGATGTAGCTGAATTGACGTGATGGCTAGACATTGATTATTAGCTTCAANATGGCATATGAACTCCGTTGAGTAGTGGTGATGGCTTAACTTGTTGGTATACTAAAATATCAGATGGCAAGTACTTCAGCTTCTTGTTCTTCCGTGGATTCTAATAGCACCCAAAGCTATAGATACGANGTGTTTATTAGTTTCAGAGGATGACCAATTGCTTCAGAAAGGAGAATCCATTTCCCCCCAACTTCTACAAGCAATTCAACATTCACGGGTTTCTATTGTTGTCTTCTCCAAAGATTATGCTGCCTCCACTTGGTGTTTGGATGAAATGGCTACTATTGCTGAATGCTGTACAGAATTGAAACAACCGGTTTTCCCTGTTTTCTATGATGTCAATCCATCTCATGTCCGAAAACAAAATGGAGTGTACGAGAGTGTCTTTGTTTTACACACTGAGCAATTCAAACACGAGCCAGGCAAGGTTGATCGATGGAAGAGTGCTATGACCTGTTTGGCTGGATCAGCTGGTTGGGATGTTAGGAATAAGCCAGAGTTCGTACAGGTTGAAAGCATTGTTCAGGCTGTAATAAAAAGATTGGGTCACAGATTCTCAGGGTTTGCTGATGACCTTATCGGAATACAACCTCGTGTAGAAGCGTTAGAAAGCATTTTAAGATTAAGCTCTGAGGATGATGGTTTTCGAGTTTTAGGAATATGGGGTATGGGTGGAANAGGAAAGACAACTCTTGCGTCTGTCTTGTATGATAGAATCTCATATNNGTTTGATGCTTGTTGTTTAATNGAGAATGTTAGCAAAATTTATAGAGATGGTGCTGCTATTGCTGTGCAGAAACAAATTCTTCGTCGAGCTATAGAAGAGAAAAATCTAGAGGAATACAGTCCTTCTGAAATATCCGGAATTGAAGTCGATTAATCATAACCACTAGAGATGAGCGTATTCTTAAAGAGTATGGAGCGGATATGGTTTATGAGGCTCAATTGATGAATGATAATGATGCTCATGAACTTTTGTGTAGAAAAGCCTTCAAAAGTGATTATTCAAGCAGCACTTTTGCAGAGCTGATTCCTGAGGTACTAAAATATGCTCAATGTCTACCATTAGCAATTAGAGTAATGGGCTCTTTCTTGTGGTCCAGAAATGCAACACAATGGATAGCTACCTTGGATGGACTGCGGAATAATCNGGACAAAAGAATTATGAAAGTGCTTCAGATAAGTTTTGAAGGACTAGAGCAAAGAGAGAGAGAAATATTTTTGCATGTTGCTTGTTTCTTTAAAGGGGAGAGGGTGGATTACGTAAGGCGAATTCTAGNTGCTTGTGGACTGCACCCCCATATTGGAATTCCACTTATTGCTGAAAAATCGCTCATCACCATTAGAAACCAGGAAATTCATATGCATGAAATGTTGCAAGAGTTGGGGAAGCAAATTGTTCGGGGACAACATCCCAATGAGCCAGGATTCTGGAGTAGATTGTGGCTTTACCAGGATTTTCATCGTGTGATGATGACAAACACGGTAACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03120	13534	22701	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01568	PDC, pdc	EC:4.1.1.1	Glycolysis / Gluconeogenesis	map00010

Gene Ontology

molecular_function

GO:0000287 magnesium ion binding

GO:0003824 catalytic activity

GO:0016831 carboxy-lyase activity

GO:0030976 thiamine pyrophosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003120s00035872.1	PF02776.13	TPP_enzyme_N	44	212	1.10E-35
Glyur003120s00035872.1	PF00205.17	TPP_enzyme_M	241	348	1.10E-17
Glyur003120s00035872.1	PF02775.16	TPP_enzyme_C	456	512	9.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	240.923
SRR1783600	control	242.251
SRR1783602	moderate drought stress	103.435
SRR1811619	moderate drought stress	103.159

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	120.817
DRR006520	Root Summer glycyrrhizin high producing strain	120.160
DRR006521	Root Winter glycyrrhizin high producing strain	402.095
DRR006522	Root Winter glycyrrhizin high producing strain	394.207
DRR006523	Root Summer glycyrrhizin low producing strain	124.641
DRR006524	Root Summer glycyrrhizin low producing strain	124.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.197
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.047

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.910
SRR2868004	Drought Stress (root)	64.014
SRR2967015	Control (root)	55.001

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.470
SRR9715740	Leaf	44.760
SRR9715741	Leaf	42.475
SRR9715739	Root	200.210
SRR9715742	Root	254.147
SRR9715743	Root	237.125

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	354.191
SRR8749028	MeJA induced 9h	628.410
SRR8749029	MeJA induced 9h	833.433
SRR8749030	Uninduced	128.019
SRR8749031	Uninduced	381.260
SRR8749032	Uninduced	468.806

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	119.027
SRR8400027	Control - Root	157.990